Re: [R] Question with uniroot function

2015-04-15 Thread Jeff Newmiller
You really need to read the help page for uniroot. The sign needs to be different at the ends of the starting interval. This is a typical limitation of numerical root finders. --- Jeff NewmillerThe

[R] Question with uniroot function

2015-04-15 Thread li li
Hi all, In the following code, I am trying to use uniroot function to solve for the root (a and b in code below) for function f1. I am not sure why uniroot function does not give the answer since when we look the graph, the function does cross 0 twice. Any suggestion? Thanks. Hanna u1

[R] REngine hangs when called within java code

2015-04-15 Thread aruni karunarathne
Dear All, I'm creating a project which uses both java and R. I created the java class named MyClass and within that wrote two separate methods (graphing1() and fitness()) to call the r scripts. public void graphing1() throws IOException { String newargs1[] = {"--no-save"}; Rengine r1 =

Re: [R] adding a bravais pearson test to spplot

2015-04-15 Thread fathalli bilel
Hi,First : thanks for your answerThis is my first post on the R-help forum and I'm not familiar with the way how to should post. I am not searching for "an example from scratch" as you said, I am able to build my own codes so I'm only looking for tips  : packages, functions that can help my issu

Re: [R] scan - open text file as list

2015-04-15 Thread Hermann Norpois
Thanks. Actually, I thought there was a way to do it with scan only ... 2015-04-15 16:40 GMT+02:00 William Dunlap : > > strsplit(x=sub(pattern="^\\* ", replacement="", x=test), split=" ") > [[1]] > [1] "a" "b" "d" > > [[2]] > [1] "z" "u" "i" "h" "hh" > > [[3]] > [1] "h" "bh" "kk" > > > Bill

Re: [R] adding a bravais pearson test to spplot

2015-04-15 Thread MacQueen, Don
I also suggest you take this question to R-Sig-geo. Since spplot() is built on the lattice package, adding new elements to an existing plot is, in my experience, difficult to learn how to do. If you can possibly start with plot() instead of spplot() you will, I think, find it much easier to add co

Re: [R] adding a bravais pearson test to spplot

2015-04-15 Thread John Kane
I think we need basic code and sample data to see what you are doing. Have a look at http://adv-r.had.co.nz/Reproducibility.html and/or http://stackoverflow.com/questions/5963269/how-to-make-a-great-r-reproducible-example for some hints. For this last link it is a good idea to follow the " rep

Re: [R] adding a bravais pearson test to spplot

2015-04-15 Thread Jeff Newmiller
I think you did not read my answer very carefully... there is a better mailing list for your question. The rest of my comments were intended to educate you, not chastise you. Mailing lists require careful communication, and you do need to improve on your end or you will have "bad luck" getting h

Re: [R] adding a bravais pearson test to spplot

2015-04-15 Thread Jeff Newmiller
Well, creating an example from scratch to show you how it is done can be a lot of work, and depending on your specific data such code can end up being wasted work. For this reason the polite thing to do is to provide a minimal reproducible example that list readers can use to start from. [1] Al

Re: [R] scan - open text file as list

2015-04-15 Thread William Dunlap
> strsplit(x=sub(pattern="^\\* ", replacement="", x=test), split=" ") [[1]] [1] "a" "b" "d" [[2]] [1] "z" "u" "i" "h" "hh" [[3]] [1] "h" "bh" "kk" Bill Dunlap TIBCO Software wdunlap tibco.com On Tue, Apr 14, 2015 at 2:34 PM, Hermann Norpois wrote: > Hello, > > I try to open a text file

Re: [R] What does exp(-coef) mean?

2015-04-15 Thread peter dalgaard
On 15 Apr 2015, at 13:11 , Anniek wrote: > I know that exp(coef) is the Hazard Ratio, but in a certain output posted > down here also a exp(-coef) is present. > > exp(coef) exp(-coef) lower .95 upper .95 > ns(CD4, 4)1 0.29058 3.4413 0.1440750.5861 > ns(CD4, 4)2

[R] adding a bravais pearson test to spplot

2015-04-15 Thread fathalli bilel
Dear all, My name is Bilel and I'am a PhD student from Tunisia working on climate modelling. My issue today is how to add a Bravais Pearson test as a contour plot to an existing spplot map. Precisely, I have plotted a SpatialPixelsDataFrame of Pearson correlation coefficients between simulated

[R] What does exp(-coef) mean?

2015-04-15 Thread Anniek
I know that exp(coef) is the Hazard Ratio, but in a certain output posted down here also a exp(-coef) is present. exp(coef) exp(-coef) lower .95 upper .95 ns(CD4, 4)1 0.29058 3.4413 0.1440750.5861 ns(CD4, 4)2 0.0987010.1316 0.0290750.3351 ns(CD4, 4)3

Re: [R] Make a Excel chart by R code

2015-04-15 Thread John Kane
John Kane Kingston ON Canada > -Original Message- > From: miao...@gmail.com > Sent: Wed, 15 Apr 2015 11:54:13 +0800 > To: r-help@r-project.org > Subject: [R] Make a Excel chart by R code > > Hi, > >I understand that there're many great graphic packages in R (e.g., > ggplot2) . Nev

Re: [R] : automated levene test and other tests for variable datasets

2015-04-15 Thread Joachim Audenaert
Hello Michael, thank you for the reply, it realy helped me to simplify my script. Basically all my questions are a bit the same, but with your hint I could solve most of my problems. Met vriendelijke groeten - With kind regards, Joachim Audenaert onderzoeker gewasbescherming - crop protectio

Re: [R] : automated levene test and other tests for variable datasets

2015-04-15 Thread Joachim Audenaert
Thank you very much for the reply Thierry, It was very useful for me, currently I updated my script as follows, to be able to use the same script for different datasets: adapting my dataset : y <- melt(dataset, na.rm=TRUE) where "na.rm = true" ommits missing data points variable <- y[,1] valu

Re: [R] Make a Excel chart by R code

2015-04-15 Thread David Stevens
By this, do you mean you want to use R to send data to Excel and have Excel create the graph without your intervention, or to use R to create a graph that looks like one of those that Excel produces? David On 4/14/2015 9:54 PM, jpm miao wrote: Hi, I understand that there're many great gr

[R] ClickStream package: How to expand mc plot?

2015-04-15 Thread Simon Givoli
Hi, I produced a mc plot with this package, but the plot is cluttered in the middle. Is there a way to expand the plot so its parts are more clear? Simon __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/

Re: [R] : automated levene test and other tests for variable datasets

2015-04-15 Thread Thierry Onkelinx
Dear Joachim, Storing your data in a long format will make this a lot easier. library(reshape2) long.data <- melt(dataset, measure.var = c("A", "B", "C", "D", "E")) library(car) leveneTest(value ~ variable, data = long.data) library(plyr) ddply(long.data, "variable", function(x){ks.test(x$value}

Re: [R] scan - open text file as list

2015-04-15 Thread Jim Lemon
Hi Hermann, This isn't much more elegant, but test.list<-sapply(test,function(x) { strsplit(x," ") },simplify=TRUE) names(test.list)<-NULL Jim On 4/15/15, Hermann Norpois wrote: > Hello, > > I try to open a text file test.txt with the content > > * a b d > * z u i h hh > * h bh kk > > so that

Re: [R] (no subject)

2015-04-15 Thread Jim Lemon
Hi Dot, Jeff's guess is probably correct, but perhaps you could describe the crazy tick marks and the repeating labels a little more. I suspect that if "newdate" was a character variable you wouldn't get a plot at all, and if it is a factor, a few of the labels might identify what went wrong. Jim