Not reproducible.
Could you please attach the dataset
QInflAvgbyPlot
Otherwise I don't see anything obviously wrong here.
Ciao!
mario
On 30-Sep-11 01:37, kelseyann wrote:
SiteSpp<-
c("ADHALP","ADLCON","ADLARC","BDALAT","BDPARC","BDLCON","BDLARC","AWCAQU","AWERU
I am a new R user. I trying to install a package all Matching but failed.
Here is the error msg.
> install.packages("Matching", dependencies=TRUE)
Installing package(s) into ‘C:/Users/jzhu/Documents/R/win-library/2.13’
(as ‘lib’ is unspecified)
--- Please select a CRAN mirror for use in this sessi
Dear R users,
I am trying to do the forest plot follow the function given on web. However,
the order of the tests has been sorted alphabetically. I would prefer
keeping the order as data frame input so that I can group and compare (from
the graph) the target immune NS1, IgG and IgM (where SD, BioR
Hello, I am using the following script to run an anova for numerous species
in a table that I have:
SiteSpp <-
c("ADHALP","ADLCON","ADLARC","BDALAT","BDPARC","BDLCON","BDLARC","AWCAQU","AWERUS","AWEANG","AWDPSI","BWCSTA","BWHPAU","BWETRI","BWERUS","BWDFIS","BWPARC","BWLCON","BWLARC","BWJBIG")
n.
>
> David,
> thank you for your reply
>
> I tried this
> attach(mtcars)
> interaction.plot(cyl, gear, mpg, type="o", pch=5:8, lty=1 )
>
> but I got this error:
> Error in match.arg(type) : 'arg' should be one of "l", "p", "b"
>
> and in ?interaction.plot, "o" it is not listed in type arguments.
David,
thank you for your reply
I tried this
attach(mtcars)
interaction.plot(cyl, gear, mpg, type="o", pch=5:8, lty=1 )
but I got this error:
Error in match.arg(type) : 'arg' should be one of "l", "p", "b"
and in ?interaction.plot, "o" it is not listed in type arguments.
Is there any other way t
pgfSweave() tries to compile your tex file to PDF by default; that is
where texi2dvi() came from.
Are you compiling the same Rnw as you mentioned before? It looks odd
because there should not be a makefile unless you turned on
externalization (the Rnw file you provided did not use
externalization)
The first suggestion would be to use dput() to allow people on here to access
your data.
see ?dput
I think you will want to post the output from:
dput(QInflAvgbyPlot) ## or whatever object contains your data
kelseyann wrote:
>
> Hello, I am using the following script to run an anova fo
On Sep 29, 2011, at 7:22 PM, Heverkuhn Heverkuhn wrote:
Hello,
I was wondering if there is any equivalent of interaction.plot that
allow
you to set type="o"
I tried to use interaction.plot and I have a gap between the symbols
of the
points and the line.
If it's OK to have the lines goi
On Sep 29, 2011, at 5:34 PM, Rosario Garcia Gil wrote:
Hello
I have a data set with fixed and random effects, therefore I am
using the lme function:
lm(y ~ xfixed, random=~1|xrandom, data)
After this I want to get the F-values for both the fixed and random
predictors. I can easily get t
Hello,
I was wondering if there is any equivalent of interaction.plot that allow
you to set type="o"
I tried to use interaction.plot and I have a gap between the symbols of the
points and the line.
Thank you in advance
[[alternative HTML version deleted]]
Hi Yihui,
thank you very much for your answer.
Just before I read your reply I deleted my basicTex and installed the full
MacTex on my system.
When I compile my .Rnw file I finally get a compiled PDF file. Nevertheless,
R outputs the following error message:
---
Not regenerat
Hi,
You do not need to use a different Sweave.sty, but I think you have to
add this to your Rnw file:
\usepackage{tikz}
Regards,
Yihui
--
Yihui Xie
Phone: 515-294-2465 Web: http://yihui.name
Department of Statistics, Iowa State University
2215 Snedecor Hall, Ames, IA
On Thu, Sep 29, 2011 at
Hello
I have a data set with fixed and random effects, therefore I am using the lme
function:
lm(y ~ xfixed, random=~1|xrandom, data)
After this I want to get the F-values for both the fixed and random predictors.
I can easily get the F-value and df for the xfixed predictors (anova()), but
ho
Hi all,
Is there a package or function you would recommend for calculating confidence
intervals for regression coefficients in quasipoisson models calculated using
glm? The intervals need to be simultaneous across several alternative models.
I know this is both a statistics and an R question,
Helios de Rosario ibv.upv.es> writes:
>
> I have a doubt about the calculation of tests for fixed effects in
> mixed-effects models.
>
> I have read that, except in well-balanced designs, the F statistic that
> is usually calculated for ANOVA tables may be far from being distributed
> as an exa
Hello,
Why does rm.outlier produce a list for me? I know its something about my
data because I can't make a mock up that reproduces the issue.
Any ideas? My data goes in as a matrix and comes out as a list:
> class(dat)
[1] "matrix"
> dat = rm.outlier(dat)
> class(dat)
[1] "list"
>
Thanks,
Ben
Thanks,It does work for the sample data.
When I use it for my actual data it is throwing this error
Error in data.frame(Sample = .samp, Chr = .set$Chr[1L], Start =
min(.set$Start), :
arguments imply differing number of rows: 1, 0
I am not able to understand Why I am getting this?
waiting for you
Hi again,
Thank you very much for taking the time to respond to my question. I am
sorry that my explanation was confusing. Please allow me to try to clarify.
First, please ignore my attempts to define a lmer model. By putting
forward my best first guess, which was clearly wrong, I have onl
I recently learned about the bigmemory and foreach packages and am trying
to use them to help me create a very large matrix. Without those
packages, I can create the type of matrix that I want with 10 columns and
5e6 rows. I would like to be able to scale up to 5e9 rows, or more, if
possible.
I'm not entirely sure how these two objects are related. Perhaps give a
little more information on the transform and we can help with
implementation...
For now checkout expand.grid() library(gtools)
Michael Weylandt
On Thu, Sep 29, 2011 at 8:25 AM, Metronome123 wrote:
> Hi,
>
> I have got this
On 9/29/11 3:38 AM, "Alexander" wrote:
> Hello, I wanted to ask if there are any guidelines for Tcl/Tk programming in
> R ? I know that there are no strict rules concerning programing. But perhabs
> there are some useful tipps how to organise Tcl/Tk code in your R script. I
> want to programm a l
On Thu, 29 Sep 2011, Bogaso Christofer wrote:
Dear all, when I look at the internal of mapply() function, I see a line of
code:
answer <- .Call("do_mapply", FUN, dots, MoreArgs, environment(),
PACKAGE = "base")
Can somebody please tell me how to find the source code of 'do_mapply'
Dear all, when I look at the internal of mapply() function, I see a line of
code:
answer <- .Call("do_mapply", FUN, dots, MoreArgs, environment(),
PACKAGE = "base")
Can somebody please tell me how to find the source code of 'do_mapply'
Thanks,
[[alternative HTML vers
On Thu, 29 Sep 2011, Jeff Newmiller wrote:
On Thu, 29 Sep 2011, maxbre wrote:
[With the context excised, something the posting guide expressly asks
not be done.]
yes, you are perfectly right, sorry for that but for me was not so
clear the error message!
A phrase involving pots and kettle
Hello,
since 3 days now I try to get pgfSweave running using Eclipse + StatET.
I created a super simple .Rnw file which can be viewed here:
http://www.text-upload.com/read.php?id=147992&c=6441045 test.Rnw
When I use sweave it works perfectly fine but when I use pgfSweave I get an
error.
The R
statquant2 wrote on 09/28/2011 10:01:30 AM:
>
> Hello I am trying to write a function that would plot timeseries
easily...
> I aim at plotting two time-series on 2 different y axis sharing the same
> x-axis
>
> I succeded in doing so:
> plotTimeSerie(x,y,y2,[a lot of other args]){
> ...
> plot(
On Thu, 29 Sep 2011, maxbre wrote:
yes, you are perfectly right, sorry for that but for me was not so clear the
error message!
and the third code example I posted (not working either) should be of
length one (if I'm not wrong again)
but most of all what is not included in my reproducible e
Dear Dave, there are some inconsistencies in your explanation of the
problem. You said your variables are:
> CO is a continuous response variable,
>
> Week is a fixed categorical factor,
>
> Habitat is a fixed categorical factor, and
>
> Location is a random categorical factor nested within Hab
Dear Steven,
you have two options, one is to make the multiple edges thicker, see
the 'edge.width' argument for that.
The other is to make multiple edges curve a bit, see the 'edge.curved'
argument.
Both of these are documented at ?igraph.plotting. You can use
count.multiple() to find the edges t
Please refer to this similar thread:
https://stat.ethz.ch/pipermail/r-help/2009-February/188445.html
JC
2011/9/29 upananda pani :
> Dear All,
>
> Can you please guide me how to check the outliers in the data set in R. It
> would be great if you can give some examples of methods.
>
> With regards,
Dear All,
Can you please guide me how to check the outliers in the data set in R. It
would be great if you can give some examples of methods.
With regards,
Upananda
--
You may delay, but time will not.
Research Scholar
alternative mail id: up...@iitkgp.ac.in
Department of HSS, IIT KGP
KGP
yes, you are perfectly right, sorry for that but for me was not so clear the
error message!
and the third code example I posted (not working either) should be of
length one (if I'm not wrong again)
but most of all what is not included in my reproducible example and get a
bit confused my ques
Chris Conner wrote on 09/29/2011 09:23:02 AM:
>
> Help-Rs,
>
> I'm doing some string manipulation in a file where I converted a
> string date in mm/dd/ format and returned the date .
>
> I've used regexpr (hat tip to Gabor G for a very nice earlier post
> on this function) in steps (
Hi Peter,
the readWorksheet function of the XLConnect package seems to do what you are
looking for. It has arguments startRow, startCol, endRow & endCol.
Alternatively, you could define a named region in Excel that encompasses the
data that you are interested in. Then you can use the readNamedRegi
Thank you!
Franco
From: David Winsemius [dwinsem...@comcast.net]
Sent: Thursday, September 29, 2011 8:09 AM
To: R. Michael Weylandt
Cc: Mendolia, Franco; r-help@r-project.org
Subject: Re: [R] Multiplying a list of matrices with a vector
On Sep 28, 2011, a
On Sep 29, 2011, at 10:10 AM, maxbre wrote:
hello all,
this is my reproducible example data frame
test<-structure(list(date = structure(c(1262300400, 1262304000,
1262304000,
1262307600, 1262307600, 1262311200, 1262311200, 1262314800,
1262314800,
1262318400, 1262318400, 1262322000, 1262322
Hi there!
Does anyone got an experience parallelizing R in conjuction with
starcluster infrostructure?
I am curious whether there are some ready to use scripts to run a
job inside StarCluster.
Thanks in advance!
Kind regards,
Alex
__
R-help@r-proj
On Sep 29, 2011, at 10:06 AM, Juliet Hannah wrote:
I am using the example in this post:
https://stat.ethz.ch/pipermail/r-help/2010-October/257204.html
# create a file
write.table(iris,"iris.csv",row.names=FALSE,sep=",",quote=FALSE)
# this does not work
# has the syntax changed or is there
Hi,
I'm using geeglm function to account for the repeated measure.
fit1<- geeglm( binary.outcome ~ age + race + gender + fever.yes.no,
data=mydata, id=ID, family=binomial, corstr="exchangeable")
summary(fit1)$coef gives too large estimates and standard deviation:
hello all,
this is my reproducible example data frame
test<-structure(list(date = structure(c(1262300400, 1262304000, 1262304000,
1262307600, 1262307600, 1262311200, 1262311200, 1262314800, 1262314800,
1262318400, 1262318400, 1262322000, 1262322000, 1262325600, 1262325600,
1262329200, 12623292
Help-Rs,
I'm doing some string manipulation in a file where I converted a string date in
mm/dd/ format and returned the date .
I've used regexpr (hat tip to Gabor G for a very nice earlier post on this
function) in steps (I've un-nested the code and provided it and an example of
what
I am using the example in this post:
https://stat.ethz.ch/pipermail/r-help/2010-October/257204.html
# create a file
write.table(iris,"iris.csv",row.names=FALSE,sep=",",quote=FALSE)
# this does not work
# has the syntax changed or is there a mistake in my usage?
# the line from the post above i
Hi
David
>
> Hey Petr
>
> thanks for the answer
>
> I guess I was a bit unclear about the nature of my data
>
> the species terms are columns in the data frame, and they are coded 0/1,
> depending whether the species is present in a plot or not.
>
>
> No I want to repeatedly fit the linea
Hi,
I have got this start situation:
structure(list(subject = structure(c(1L, 1L, 1L, 1L, 1L, 1L,
2L, 2L, 2L, 2L, 2L), .Label = c("s1", "s2"), class = "factor"),
part = structure(c(1L, 1L, 2L, 3L, 4L, 5L, 1L, 1L, 2L, 6L,
6L), .Label = c("p1", "p2", "p3", "p4", "p5", "p9"), class = "fac
I am having trouble plotting one of my graphs (think graph theory graph with
edges and vertices, not scatterplots or histograms). For some pairs of
vertices, I want multiple edges to be visible in my graph. As an example of
this, in my script below, I want two edges to be visible from vertex 1 an
On Sep 28, 2011, at 6:26 PM, R. Michael Weylandt wrote:
Untested:
mapply('*', LL, vec)
Those should be backticks but I can't type them on my phone
Actually mapply does not require backticks since it is expecting its
functions to be quoted anyway, but it didn't seem to work as you (and
I
That is really helpful - and works perfectly! Thank you very much, all
responses have been greatly appreciated.
--
View this message in context:
http://r.789695.n4.nabble.com/betareg-question-keeping-the-mean-fixed-tp3783303p3855134.html
Sent from the R help mailing list archive at Nabble.com.
Hey Petr
thanks for the answer
I guess I was a bit unclear about the nature of my data
the species terms are columns in the data frame, and they are coded 0/1,
depending whether the species is present in a plot or not.
No I want to repeatedly fit the linear model with all the species presenc
Hi Felipe
On 25 September 2011 00:16, Felipe Nunes wrote:
> Hi Arne,
> my problem persists. I am still using censReg [version - 0.5-7] to run a
> random effects model in my data (>50,000 cases), but I always get the
> message.
> tob7 <- censReg(transfers.cap ~ pt.pt + psdb.pt + pt.opp + pt.coa +
Hi
Well, are those names (Acer_davidii, ...) columns in data frame? If not
and you want them as factors of species you shall reformat your input so
as you get data frame with columns mortality, richness, species,
community. Column species shall have your plant species names in each
respective
dimitris,
this helps me very much, thank you!
marion
2011/9/29 Dimitris Rizopoulos
> One option is mapply(), e.g.,
>
>
> mylist <- list("v1"=c(1,2,2,1), "v2"=c(2,2,2,1), "v3"=c(1,1,1,1))
> myvector <- c(100, 1, 100)
>
> mapply("*", mylist, myvector)
> mapply("*", mylist, myvector, SIMPLI
One option is mapply(), e.g.,
mylist <- list("v1"=c(1,2,2,1), "v2"=c(2,2,2,1), "v3"=c(1,1,1,1))
myvector <- c(100, 1, 100)
mapply("*", mylist, myvector)
mapply("*", mylist, myvector, SIMPLIFY = FALSE)
I hope it helps.
Best,
Dimitris
On 9/29/2011 11:43 AM, Marion Wenty wrote:
hello
hello everybody,
i have got a question about lists:
i have got the following commands:
mylist <- list("v1"=c(1,2,2,1),"v2"=c(2,2,2,1),"v3"=c(1,1,1,1))
myvector <- c(100,1,100)
now i would like to multiply each element of the list with the corresponding
element of the vector, that is to
On Wed, 2011-09-28 at 02:10 -0700, pigpigmeow wrote:
> For example:
> GAMs and after stepwise regression:
You probably don't want to be doing stepwise model/feature selection in
any regression model. Marra & Wood (2011, Computational Statistics and
Data Analysis 55; 2372-2387) show results that s
Hi
>
> That's cool!
>
> it works :-)))
>
> for me (as a stata user) these are quite basic things and I didn't find
> them anywhere for what concerns R. I can't figure out why.
> Really, thank you so much,
Your wellcome
BTW after reading R intro which shall be in doc directory of your
install
Hello, I wanted to ask if there are any guidelines for Tcl/Tk programming in
R ? I know that there are no strict rules concerning programing. But perhabs
there are some useful tipps how to organise Tcl/Tk code in your R script. I
want to programm a little GUI and I don't want to reprogram the whole
See ?predict.gam
You create a data frame (e.g. `dat2011') containing the 2011 values for
RH, solar, windspeed and transport, then
predict(cod,dat2011,type="response")
there are various options for type -- see ?predict.gam
On 09/28/2011 10:10 AM, pigpigmeow wrote:
For example:
GAMs and aft
Hi everyone
I am new to the list and read all the instructions, hope i get it right.
I have the following linear model:
model_sqrt<-lm(sqrt(mortality)~richness
+Acer_davidii+Ailanthus_altissima+Alniphyllum_fortunei
+Betula_luminifera+Castanea_henryi+Castanopsis_car
I have a doubt about the calculation of tests for fixed effects in
mixed-effects models.
I have read that, except in well-balanced designs, the F statistic that
is usually calculated for ANOVA tables may be far from being distributed
as an exact F distribution, and that's the reason why the anova
Dear R-users,
I'd like to announce the release of the new version of package JM (soon
available from CRAN) for the joint modeling of longitudinal and
time-to-event data using shared parameter models. These models are
applicable in mainly two settings. First, when focus is in the survival
outc
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