/r_2example_8C.html
BTW, I strongly disagree that C++ does not have a bright future!
Best regards,
Christian
_._._._._._._._._._._._._._._._._._
C.h.r.i.s.t.i.a.n S.t.r.a.t.o.w.a
V.i.e.n.n.a A.u.s.t.r.i.a
e.m.a.i.l: cstrato at aon.at
_._._._._._._._._._._._._._._._._._
P.S.: Accessing a
ices utils datasets methods base
Best regards
Christian
_._._._._._._._._._._._._._._._._._
C.h.r.i.s.t.i.a.n S.t.r.a.t.o.w.a
V.i.e.n.n.a A.u.s.t.r.i.a
e.m.a.i.l:cstrato at aon.at
_._._._._._._._._._._._._._._._._._
__
R-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-devel
(unlist(u2p))
865176 bytes
Nevertheless, a size of 1.2MB for a list representing 2 of 11 columns of
a table of size 754KB seems still to be pretty large?
Best regards
Christian
On 7/12/10 11:44 PM, Martin Morgan wrote:
On 07/12/2010 01:45 PM, cstrato wrote:
Dear all,
With great inter
Dear Martin,
Thank you for this explanation.
Best regards
Christian
On 7/13/10 12:31 AM, Martin Morgan wrote:
On 07/12/2010 03:00 PM, cstrato wrote:
Dear Martin,
Thank you, you are right, now I get:
ann<- read.delim("Hu6800_ann.txt", stringsAsFactors=FALSE)
object.size(
ng message.
Thank you in advance.
Best regards
Christian
_._._._._._._._._._._._._._._._._._
C.h.r.i.s.t.i.a.n S.t.r.a.t.o.w.a
V.i.e.n.n.a A.u.s.t.r.i.a
e.m.a.i.l: cstrato at aon.at
_._._._._._._._._._._._._._._._._._
__
R-devel@r-p
Dear Bill,
It would be great if this warning message could at least be suppressed
on Windows.
Best regards
Christian
On 9/14/10 2:06 AM, William Dunlap wrote:
-Original Message-
From: r-devel-boun...@r-project.org
[mailto:r-devel-boun...@r-project.org] On Behalf Of cstrato
Sent
interfere with this
step. Do you have any ideas?
Best regards
Christian
On 9/13/10 11:31 PM, Dirk Eddelbuettel wrote:
On 13 September 2010 at 23:07, cstrato wrote:
| Dear all,
|
| When running R CMD check on Windows XP to test my package I get the
| following warning message:
|
| "
ected files will add another 4MB to the source code.
Best regards
Christian
On 9/14/10 9:59 PM, Simon Urbanek wrote:
On Sep 14, 2010, at 2:27 PM, cstrato wrote:
Dear Bill,
It would be great if this warning message could at least be suppressed on
Windows.
I think you're missing
ar.gz" increases only from 4MB to
4.3MB. Thus in principle I could upload both files to SVN for BioC 2.7,
and this should eliminate the warning message. What is your opinion?
Best regards
Christian
On 9/14/10 11:32 PM, Hervé Pagès wrote:
Hi Christian,
On 09/14/2010 02:12 PM, cstrato wr
I will try to change this part but I am not sure if this will solve the
problem.
Best regards
Christian
On 9/15/10 1:58 AM, Hervé Pagès wrote:
On 09/14/2010 03:30 PM, Duncan Murdoch wrote:
On 14/09/2010 6:08 PM, Hervé Pagès wrote:
On 09/14/2010 02:58 PM, cstrato wrote:
Dear Herve,
Thank
rk Eddelbuettel wrote:
On 15 September 2010 at 22:39, cstrato wrote:
| Dear Duncan, dear Herve,
|
| Thank you both for your help and suggestions. I think that you are both
| right:
|
| In principle I do not want to put these files in the source tarball (and
| I did not in the past), however because o
Christian
On 9/15/10 11:53 PM, Hervé Pagès wrote:
On 09/15/2010 01:51 PM, Dirk Eddelbuettel wrote:
On 15 September 2010 at 22:39, cstrato wrote:
| Dear Duncan, dear Herve,
|
| Thank you both for your help and suggestions. I think that you are both
| right:
|
| In principle I do not want to put
case R CMD check does not complain, so why does it in the case
of 'QualTreeSet'?
Here is my:
> sessionInfo()
R version 2.12.1 (2010-12-16)
Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
locale:
[1] C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] xps_1.11.4
Thank you in advance
Best regards
Christian
_._._._._._._._._._._._._._._._._._
C.h.r.i.s.t.i.a.n S.t.r.a.t.o.w.a
V.i.e.n.n.a A.u.s.t.r.i.a
e.m.a.i.l:cstrato at aon.at
_._._._._._._._._._._._._._._._._._
__
R-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-devel
Dear all,
Meanwhile I found my mistake.
I forgot to add class QualTreeSet to 'initialize-methods.Rd'.
However, I am not sure if I should make 'initialize' public at all.
Best regards
Christian
On 3/11/11 9:58 PM, cstrato wrote:
Dear all,
I am just writing the documentati
_1.10.0
[4] affy_1.30.0 affyPLM_1.28.5affyio_1.20.0
[7] preprocessCore_1.14.0
Thank you in advance.
Best regards
Christian
_._._._._._._._._._._._._._._._._._
C.h.r.i.s.t.i.a.n S.t.r.a.t.o.w.a
V.i.e.n.n.a A.u.s.t.r.i.a
e.m.a.i.l:
"tmpdt_Test3RMA", verbose=FALSE)
In summary it is not quite clear to me what has changed in R-2.13.0 so
that chunk 5 no longer works.
BTW, the error:
SysError in : file
/tmpdt_DataTest3_cel.root/tmpdt_DataTest3_cel_20110424_201301.root can
not be opened
is not clear to me since "
Dear Uwe,
On 4/24/11 10:37 PM, Uwe Ligges wrote:
On 24.04.2011 20:59, cstrato wrote:
Dear Uwe,
Thank you for your reply.
ad 2, Yes, i know that "xps-manual.pdf" is the collection of help pages,
I have mentioned it only to show that creating pdf-files does work for
R-2.13.0.
ad 1
which
contains the vignette data such as xps.Rnw, but also xps.tex and xps.pdf.
In contrast, R-2.13.0 does not create the subdirectory "inst/doc" and no
vignettes are built.
One more issue:
In contrast to my former believe R CMD INSTALL does not build the
vignettes, neither in R-2.12
4/25/11 8:00 PM, Duncan Murdoch wrote:
cstrato wrote:
Dear Uwe,
Your suggestion to look at the Sweave manual helped me to solve the
problem. It seems that in R-2.13.0 every chunk can use the code from
the chunk before but not from an earlier chunk.
I'm either misreading what you wrote, or
Thank you.
My problem seems to be that at the moment the problem can be seen only
on my Mac, since e.g. the Bioconductor servers have no problems creating
the vignettes.
Best regards
Christian
On 4/25/11 8:55 PM, Duncan Murdoch wrote:
cstrato wrote:
Dear Duncan,
Thank you for your
Thank you, I will try. Christian
On 4/25/11 9:31 PM, Duncan Murdoch wrote:
On 25/04/2011 3:16 PM, cstrato wrote:
Thank you.
My problem seems to be that at the moment the problem can be seen only
on my Mac, since e.g. the Bioconductor servers have no problems creating
the vignettes.
Then
maybe my Mac did not like
to work during eastern holidays).
However, one issue remains:
"R64 CMD check xps_1.13.1.tar.gz" no longer creates any pdf files for
the vignettes.
Best regards
Christian
On 4/25/11 9:31 PM, Duncan Murdoch wrote:
On 25/04/2011 3:16 PM, cstrato wrote:
Than
in any
vignettes.
Best regards
Christian
On 4/27/11 10:16 AM, Uwe Ligges wrote:
On 26.04.2011 21:58, cstrato wrote:
Dear Duncan, dear Uwe,
Just now I have re-run everything, and today xps.Rnw can be converted to
a vignette w/o any problems using:
a, buildVignettes("xps", dir="/Vo
D check no longer create the vignettes?
Best regards
Christian
On 4/27/11 10:16 AM, Uwe Ligges wrote:
On 26.04.2011 21:58, cstrato wrote:
Dear Duncan, dear Uwe,
Just now I have re-run everything, and today xps.Rnw can be converted to
a vignette w/o any problems using:
a, buildVignettes(
contain "inst".
Best regards
Christian
_._._._._._._._._._._._._._._._._._
C.h.r.i.s.t.i.a.n S.t.r.a.t.o.w.a
V.i.e.n.n.a A.u.s.t.r.i.a
e.m.a.i.l:cstrato at aon.at
_._._._._._._._._._._._._._._._._._
On 5/2/11 7:08 AM, Prof Brian Ripley wrote:
On Sun, 1 May 2011, Dun
.
Best regards
Christian
On 5/3/11 1:07 PM, Uwe Ligges wrote:
On 02.05.2011 21:24, cstrato wrote:
Dear Prof. Ripley,
Thank you for your confirmation and explanation, I understand the reason
for cleaning things up to save memory. However, it was very convenient
to have this feature in earlier
es for the vignettes.
Best regards
Christian
On 5/3/11 10:13 PM, Uwe Ligges wrote:
On 03.05.2011 21:14, cstrato wrote:
Dear Uwe,
This is my development cycle:
First, I run R CMD check until there are no more warnings/errors. Since
years it was very convenient that R CMD check builds the pdf-fi
No, I simply do "tar czf xps_1.13.1.tar.gz xps".
Best regards
Christian
On 5/3/11 11:11 PM, Simon Urbanek wrote:
> On May 3, 2011, at 4:48 PM, cstrato wrote:
>
>> Dear Uwe,
>>
>> Thank you, however since I use "R CMD INSTALL xps.tar.gz" my source co
this would mean 140 minutes vs 60
minutes, i.e. the official development cycle would take 1 hr and 20 min
longer than my own development cycle. This is time I do not have.
Best regards
Christian
On 5/4/11 12:13 AM, Simon Urbanek wrote:
On May 3, 2011, at 5:15 PM, cstrato wrote:
No, I simp
M, Hervé Pagès wrote:
Hi Christian,
On 11-05-04 01:02 PM, cstrato wrote:
Dear Simon,
I did not complain about the R doing something wrong. I only wanted to
know why, after all these years, R CMD check does suddenly no longer
build the pdf-files of the vignettes. I also think that this is a leg
uss this issue further privately.)
Best regards
Christian
On 5/9/11 7:20 AM, Hervé Pagès wrote:
Christian,
On 11-05-08 01:19 PM, cstrato wrote:
Dear Herve,
In my initial mail:
https://stat.ethz.ch/pipermail/r-devel/2011-April/060688.html
I wrote: "While R CMD check and R CMD INSTALL hav
me from Spotlight. This did not help. Adding
the volume
again and thus forcing a rebuild for Spotlight did not help either.
What could I do to remove these apparently non-existing hidden files?
Best regards
Christian
_._._._._._._._._._._._._._._._._._
C.h.r.i.s.t.i.a.n S.t.r.a.t.o.w.a
V.i.e.n.n.a A.u.s.t.r.i.a
e.m.a.i.l:cstrato at aon.at
_._._._._._._._._._._._._._._._._._
__
R-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-devel
lude
resource forks.
Cheers,
Simon
On Sep 26, 2015, at 3:30 PM, cstrato wrote:
Dear all,
When running R CMD check on my Mac (Yosemite 10.10.5) I get suddenly NOTEs and
WARNINGs
that my tar.gz file does contain hidden files.
However, when checking the corresponding directories with
at 22:41, cstrato wrote:
| Dear Simon,
|
| Thank you very much for your help, it did solve my problems!! Great!
|
| I have googled COPYFILE_DISABLE and found the following site which does
| explain the issue with tar on Mac OS X, see:
|
http://unix.stackexchange.com/questions/9665/create-tar
, but it will not explain this
behavior which suddenly popped up.
Best regards,
Christian
On 09/26/15 23:30, Dirk Eddelbuettel wrote:
On 26 September 2015 at 23:06, cstrato wrote:
| Dear Dirk,
|
| Yes, I know, however forget for one moment R.
No we can't. Your question was about to make
Simon Urbanek wrote:
On Sep 26, 2015, at 5:06 PM, cstrato wrote:
Dear Dirk,
Yes, I know, however forget for one moment R.
If I use tar independent of R it still should not create these hidden files.
BTW, do you know where these hidden files are stored on the Mac?
Please consider readi
Dear Jack,
First, please do not use r-help or r-devel to ask Bioconductor-related
questions, Bioconductor has its own support site for BioC packages:
https://support.bioconductor.org/
Second, please note that ROOT_6.x cannot be used for xps.
In the README file I mention for Yosemite:
ftp://ro
for further
quality assessments. \\
\section*{Session Information:}
<>=
sessionInfo()
@
\end{document}
Can you please tell me why function buildVignettes() of the tools
package is no longer able to convert this file into a pdf-file?
Thank you in advance.
> sessionInfo()
R
3.0.0 Patched (2013-04-11 r62551)
Platform: x86_64-apple-darwin10.8.0 (64-bit)
I would check with R 3.0.1 patched and R devel before anything else,
especially when troubleshooting vignette-related issues.
/Henrik
On Wed, Aug 28, 2013 at 12:33 PM, cstrato wrote:
Dear all,
When running
t regards,
Christian
_._._._._._._._._._._._._._._._._._
C.h.r.i.s.t.i.a.n S.t.r.a.t.o.w.a
V.i.e.n.n.a A.u.s.t.r.i.a
e.m.a.i.l:cstrato at aon.at
_._._._._._._._._._._._._._._._._._
__
R-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-devel
ttp://cran.CH.r-project.org/web/packages/
---
Martin
> On 29.08.2013 14:08, cstrato wrote:
>> Dear all,
>>
>> On the CRAN website http://cran.r-project.org/ it is
>> currently not possible to get to the packages. Clicking
>&
<%=numtrees%> Affymetrix <%=chiptype%> arrays of type '<%=chipname%>'.
you can compile it all in one go into a final PDF by pdf <-
R.rsp::rfile("template.Rnw.rsp"). RSP supports <%@include
file="..."%> statements and more if you wish to
30/08/2013 3:09 PM, Marc Schwartz wrote:
On Aug 30, 2013, at 2:00 PM, cstrato wrote:
> Dear all,
>
> To create a *.pdf file from a *.Rnw file I do:
>
> olddir <- getwd();
> setwd(outdir);
>
> tryCatch({Sweave("QAReport.Rnw");
>
) and
newer. It is now simply comparing the set of files before and after.
Try with one of those and I'll bet you that clean=TRUE does what it
supposed to.
/Henrik
On Fri, Aug 30, 2013 at 1:05 PM, cstrato wrote:
Dear Henrik,
I am trying to attach the 'QAReport.Rnw' file which I
-- end QAReport.Rnw
On 8/30/13 9:46 PM, Henrik Bengtsson wrote:
On Fri, Aug 30, 2013 at 12:40 PM, Marc Schwartz wrote:
On Aug 30, 2013, at 2:20 PM, Henrik Bengtsson wrote:
On Fri, Aug 30, 2013 at 12:14 PM, Duncan Murdoch
wrote:
On 30/08/2013 3:09 PM, Marc Schwartz wrote:
On Aug 30
the next Bioconductor release on October.
Best regards,
Christian
On 8/30/13 9:36 PM, Henrik Bengtsson wrote:
On Fri, Aug 30, 2013 at 12:21 PM, cstrato wrote:
Dear Duncan, dear Marc,
Thank you for your fast reply.
Can you please tell me:
If texi2pdf() won't delete files how are t
Dear Henrik,
I am trying to attach the 'QAReport.Rnw' file which I am using on my Mac
to reproduce your problem.
Best regards,
Christian
On 8/30/13 9:50 PM, cstrato wrote:
Dear Henrik,
Thank you for your explanation.
Yes, this behavior is reproducible many times.
When I copy
letion of interim files?
(The help file?texi2pdf does not mention that this structure is necessary.)
Best regards
Christian
_._._._._._._._._._._._._._._._._._
C.h.r.i.s.t.i.a.n S.t.r.a.t.o.w.a
V.i.e.n.n.a A.u.s.t.r.i.a
e.m.a.i.l:cstrato at aon.at
_._._._._._._._._._._._._.
;++numsels' with 'numsels+1'?
Best regards,
Christian
_._._._._._._._._._._._._._._._._._
C.h.r.i.s.t.i.a.n S.t.r.a.t.o.w.a
V.i.e.n.n.a A.u.s.t.r.i.a
e.m.a.i.l:cstrato at aon.at
_._._._._._._._._._._._._._._._._._
__
:45 PM, Romain François wrote:
Le 23 juin 2014 à 15:20, cstrato a écrit :
Dear all,
Since many years the following C++ code does compile on ALL Bioconductor
servers (Linux, Windows, Mac) without any warnings:
Int_t numsels = 0; //number of selected entries
...
for (Int_t i=0; i
14 7:13 PM, Romain François wrote:
Le 23 juin 2014 à 18:28, cstrato a écrit :
Dear Romain,
Thank you for your suggestions, I like especially the first one.
However, you did not explain why I have never got this warning message on any
compiler, and why only one of the two identical Ubuntu com
s a recent thread on this specific aspect of ++ recently, but I
forgot which email list.
Kasper
On Mon, Jun 23, 2014 at 2:54 PM, cstrato mailto:cstr...@aon.at>> wrote:
Dear Romain,
I do not know enough about compilers, but as far as I remember, they
'work' from right to
On 06/23/2014 03:18 PM, Hervé Pagès wrote:
Hi Christian,
On 06/23/2014 11:54 AM, cstrato wrote:
Dear Romain,
I do not know enough about compilers, but as far as I remember, they
'work' from right to left,
Not necessarily. So you should not rely on that. This is what the
(somewh
Vista library "xps.dll"
compiled with option "/MD" does work perfectly fine when running from
within ROOT!
Please, can anybody tell me why Rterm on Vista crashes when running
library(xps)?
It seems that for option "/MD&qu
only option.
Best regards
Christian
Duncan Murdoch wrote:
On 18/09/2009 6:12 PM, cstrato wrote:
Dear all,
Please, please I really need your help, since I am not able to solve
the problem myself:
It seems that until now most Windows users of my Bioconductor package
"xps" use Windo
/MD" is used when compiling programs
with VC++.)
Best regards
Christian
_._._._._._._._._._._._._._._._._._
C.h.r.i.s.t.i.a.n S.t.r.a.t.o.w.a
V.i.e.n.n.a A.u.s.t.r.i.a
e.m.a.i.l:cstrato at aon.at
_._._._._._._._._._._._._._._._._._
_
instead of option "/MD"?
2, Will the proposed settings to build the DLL still be valid for the
upcoming Windows 7?
Best regards
Christian
_._._._._._._._._._._._._._._._._._
C.h.r.i.s.t.i.a.n S.t.r.a.t.o.w.a
V.i.e.n.n.a A.u.s.t.r.i.a
e.m.a.i.l:
my case neither option works on Vista, see my more
detailed question at:
https://stat.ethz.ch/pipermail/r-devel/2009-September/054843.html
If you have any idea in this case I would appreciate it very much.
Best regards
Christian
Simon Urbanek wrote:
On Oct 15, 2009, at 17:01 , cstrato wrote
Have a look at:
http://www.bioconductor.org/packages/release/bioc/html/xps.html
It is almost completely C++
Regards
Christian
_._._._._._._._._._._._._._._._._._
C.h.r.i.s.t.i.a.n S.t.r.a.t.o.w.a
V.i.e.n.n.a A.u.s.t.r.i.a
e.m.a.i.l:cstrato at aon.at
ion error on
Debian/Ubuntu?
Which development headers/packages (glibc-headers, glibc-kernheaders??)
need to be installed on Debian/Ubuntu?
Best regards
Christian
_._._._._._._._._._._._._._._._._._
C.h.r.i.s.t.i.a.n S.t.r.a.t.o.w.a
V.i.e.n.n.a A.u.s.t.r.i.a
e.m.a.i.l:
clude " to some C++ *.cxx files did solve the problem.
The question is, why did this user need to add "#include " on
Debian, while this is not necessary on OpenSUSE11.1 and MacOS X?
Best regards
Christian
Dirk Eddelbuettel wrote:
Christian,
On 10 February 2010 at 22:02, cstra
y with
that some OSes (especially MinGW32) include from more
common headers and some do not.
So this may be an OS issue but a compiler-version issue is more likely.
On Wed, 10 Feb 2010, cstrato wrote:
Dear Debian/Ubuntu experts,
For the second time users of my BioC package reported pro
ot; I will
include the header file.
I did not realize that there is a dedicated r-sig-debian mailing list,
which I will use next time.
Best regards
Christian
Dirk Eddelbuettel wrote:
Christian,
On 10 February 2010 at 22:40, cstrato wrote:
| Dear Dirk,
|
| Thank you for your fast r
Dear all,
I am currently learning how to create R packages using C++ classes.
For this purpose I have written a small package MyClass (which I try
to attach since I do not have access to a website).
MyClass has methods WriteFileC() and WriteFileCpp() which implement
C-style and C++-style writing
Dirk Eddelbuettel wrote:
> On 4 February 2007 at 20:17, cstrato wrote:
> | I am currently learning how to create R packages using C++ classes.
>
> Congratulations :)
>
> [ This reminds me to email Oleg (CC'ed). Oleg, your HOWTO is a very useful.
> Would you co
Dirk Eddelbuettel wrote:
> On 4 February 2007 at 21:20, cstrato wrote:
> | Thank you for your fast answer.
> | Sorrowly, I don´t know how to use a debugger on MacOS X, I am using
> | old-style print commands.
> | However, here is the output of the crash log from my Mac. Does it h
Seth Falcon wrote:
> cstrato <[EMAIL PROTECTED]> writes:
>
>> Thank you for your fast answer.
>> Sorrowly, I don´t know how to use a debugger on MacOS X, I am using
>> old-style print commands.
>>
>
> You should be able to use gdb on OS X
;
output.close();
}
This means, that the operator "<<" seems to cause the problem, but why?
Best regards
Christian
Jochen Laubrock wrote:
> Hi cstrato,
>
>
> On 04.02.2007, at 22:47, cstrato wrote:
>
>> ostream.tcc
>>
>
>
> On my system
Ross Boylan wrote:
> On Sun, Feb 04, 2007 at 10:47:37PM +0100, cstrato wrote:
>
>> Seth Falcon wrote:
>>
>>> cstrato <[EMAIL PROTECTED]> writes:
>>>
>>>
>>>> Thank you for your fast answer.
>>>> Sorrowly
Ross Boylan wrote:
> On Thu, Feb 08, 2007 at 10:04:14PM +0100, cstrato wrote:
>
>> Ross Boylan wrote:
>>
>>> On Sun, Feb 04, 2007 at 10:47:37PM +0100, cstrato wrote:
>>>
>>>
>>>> Seth Falcon wrote:
>&g
Dear Ross
Thank you for this clarification, maybe there is something
misconfigured on my Intel-Mac.
BTW, I have now upgraded to XCode 2.4.1 from 2.4, but the result remains
the same.
I don´t know if this could help clarify what might be wrong, but I am
not able to compile
plier, a simple pack
Dear Kasper
Thank you, but I want to keep the focus on my own problem (I can indeed
compile your package).
Since I do not have an url, I would like to attach my package, so that
people could try it.
In my initial mailing I have attached my package as
MyClass_0.1.2.tar.gz, but it got scrambled
Dear all,
Maybe, I am doing something wrong, but using R-2.5.0 on my Intel-Mac, I
have problems
using function callNextMethod() in method initialize.
I am loading the following code as file "testS4.R":
setClass("baseClass",
representation(myname = "character",
mydir = "cha
Dear Seth
Thank you for your comments. Please see my comments and at the end my
corrected code and output.
Sorrowly, the problem remains the same.
Seth Falcon wrote:
> cstrato <[EMAIL PROTECTED]> writes:
>
>
>> Dear all,
>>
>> Maybe, I am doing something wro
Dear Martin
Thank you for this extensive explanation!
I hope that I have understood it, but I will realize it as I proceed with my
package. Now, my example works as I have expected it to work, great!
One problem that I face is lack of extensive explanation of S4 classes,
especially with respect t
Dear all,
Recently, there was a question to use the same method for more than one
class:
https://stat.ethz.ch/pipermail/r-devel/2007-March/044809.html
I have a variation of this question:
Is it possible to use the same function name, e.g. "myfunction" in both,
an S4
baseClass and derivedClass.
Dear Seth
Thank you, maybe I still do not understand S4 methods.
I thought that the purpose of function "callNextMethod()" is to allow
some kind of inheritance. In the Bioconuductor packages which are
using S4, it is only used for method("initialize") but I thought, that
it can be used with every
Dear all,
Currently, I am trying to create a test package "testS4" using S4 classes,
which I am attaching.
Running R CMD check gives the following error:
coeurebooks-computer:/Volumes/CoreData/CRAN cs$ R CMD check
testS4_0.1.1.tar.gz
* checking for working latex ...sh: line 1: latex: command
any compiled code...
>
> remove that line and everything will be fine.
>
> btw, if you're playing with S4, you must import 'methods'
>
> b
>
> On Mar 16, 2007, at 4:55 PM, cstrato wrote:
>
>> Dear all,
>>
>> Currently, I am trying to
Dear Seth
Thank you, I will further explain this feature.
Best regards
Christian
__
R-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-devel
ics in the respective methods files.
Best regards
Christian
Benilton Carvalho wrote:
> do you have a generic for 'export'?
>
> On Mar 16, 2007, at 5:38 PM, cstrato wrote:
>
>> Dear Benilton
>>
>> Thank you, now my package works.
>>
>> D
;
> Do you have a collate field in your description file? IMHO, the
> "AllGeneric.R"/"AllClasses.R" approach is the way to go... keeping
> your code organized is always a good thing, right?
>
> b
>
> On Mar 16, 2007, at 6:35 PM, cstrato wrote:
>
&g
t;
> Session 1.1.1 - The Description File (Writing R Extensions)
>
> says exactly what you shohuld know about the Collate field (and not
> only that).
>
> b
>
> On Mar 16, 2007, at 7:01 PM, cstrato wrote:
__
R-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-devel
I must have missed this, thank you.
Good night
Christian
Benilton Carvalho wrote:
> Biobase itself does.
> b
>
> On Mar 16, 2007, at 7:43 PM, cstrato wrote:
>
>> Thank you, I have already read the R-exts manual, but the collate
>> field is optional.
>> Do
Dear all,
The package "affy" has the following statement in file "AffyBatch.R":
if (debug.affy123) cat("-->initAffyBatch\n")
This is great and I would also like to use it. However, when I run my
package
I get the following error:
Error in .local(object, ...) : object "debug.mypkg" not found
Sin
arvalho wrote:
> debug.affy123 is not a function... it's just a logical flag set in
> ProgressBarText.R.
>
> b
>
> On Mar 22, 2007, at 6:22 PM, cstrato wrote:
>
>> Dear all,
>>
>> The package "affy" has the following statement in file "Aff
t; it doesn't matter where..
>
> just pick one of your files and set it...
>
> of course, your file should be listed in the Collate field (in case
> you changed your mind and are now using it).
>
> b
>
> On Mar 22, 2007, at 6:52 PM, cstrato wrote:
>
>> Yes, I k
Dear all,
I have already twice encountered a case which I consider a limitation of
dirname() and basename().
In my functions I have a parameter "outfile" which e.g. tells where a file
should be stored. Usually "outfile" is of the form:
oufile = "/my/path/myname.txt"
> outfile <- "/my/path/mynam
nals work in the same way:
>
> gannet% dirname /my/path/
> /my
>
> Please DO study the R posting guide and do the homework requesting of
> you before posting.
>
> On Mon, 26 Mar 2007, cstrato wrote:
>
>> Dear all,
>>
>> I have already twice encountered a
Hin-Tak Leung wrote:
> cstrato wrote:
>> 1. I did read the help file.
>> 2. I have my own workaround, using e.g.
>> file.info("/my/path/")[,"isdir"]
>> 3. This was a suggestion.
>> 4. If you agree with me that "/my/path/" is a pa
Gabor Grothendieck wrote:
> On 3/27/07, cstrato <[EMAIL PROTECTED]> wrote:
>> Hin-Tak Leung wrote:
>> > cstrato wrote:
>> >> 1. I did read the help file.
>> >> 2. I have my own workaround, using e.g.
>> >> file.info("/my/path/"
Simon Urbanek wrote:
>
> On Mar 27, 2007, at 2:49 PM, cstrato wrote:
>
>> Hin-Tak Leung wrote:
>>> cstrato wrote:
>>>> 1. I did read the help file.
>>>> 2. I have my own workaround, using e.g.
>>>> file.info("/my/path/")[,&qu
I am glad to hear that there seems to be some commitment for improvement,
although I must admit, that I did not realize that both functions do not
check
if a name is a directory or a filename, even though the definition in "The
Open Group Base Specifications" says:
dirname - return the direct
Dear all,
Assume that I have an S4 class "MyClass" with a slot "myname", which
is initialized to: myname="" in method("initialize"):
myclass <- new("MyClass", myname="")
Assume that class "MyClass" has a method "mymethod":
"mymethod.MyClass" <-
function(object, myname=character(0), ...)
8PM +0200, cstrato wrote:
>
>> Dear all,
>>
>> Assume that I have an S4 class "MyClass" with a slot "myname", which
>> is initialized to: myname="" in method("initialize"):
>>myclass <- new("MyClass", myna
Dear all,
To explain my problem I am attaching a demonstration package "myclasspkg":
I have the following two S4 classes with similar inheritance:
SubSubClassA <- SubClassB <- BaseClass
SubSubClassB <- SubClassB <- BaseClass
In R I am calling the following functions:
> library(myclasspkg)
>
Dear S4 experts,
Since I was reminded that I posted a similar question some time ago,
I am attaching a modified version of my demo package, which allows me
to track what happens during initialization of the following similar
subclasses:
SubSubClassA <- SubClassB <- BaseClass
SubSubClassB <- S
Dear Herve
Thank you for your helpful comments, and I especially appreciate that
you tried to run my package. I will try to answer each point separately.
Herve Pages wrote:
Hi Christian,
I can only give you a few reasons why IMO it is very unlikely that anybody
will be able to help you on this
",
sep="")
.Object <- callNextMethod(.Object, ...)
.Object
}
)
setValidity("SubSubClassB1",
function(object) {
cat("--setValidity:SubSubClassB1--\n")
cat("SubSubClassB1:val:class(object) = ", class(object), "\
Dear Herve, dear Martin,
First I want to thank Herve very much for your continuous efforts. You can
not imagine, how relieved I was that you mangaged to reproduce this
behavior.
Just when I wanted to send my reply to Herve, I received Martin's comments:
As you mention, there were two problems in
1 - 100 of 125 matches
Mail list logo
