Dear all,
When running R CMD check on my Mac (Yosemite 10.10.5) I get suddenly
NOTEs and WARNINGs
that my tar.gz file does contain hidden files.
However, when checking the corresponding directories with 'ls -al' (or
with mc)
none of these files does exist!! (with exception .BBSoptions).
Here is a partial output of 00check.log:
* using log directory '/Volumes/LumiData/CRAN/xps.Rcheck'
* using R version 3.2.0 (2015-04-16)
* using platform: x86_64-apple-darwin13.4.0 (64-bit)
* using session charset: ASCII
* checking for file 'xps/DESCRIPTION' ... OK
* this is package 'xps' version '1.29.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
.BBSoptions
._.BBSoptions
._DESCRIPTION
._NAMESPACE
._R
._README
._build
._inst
._man
._src
._vignettes
R/._AffyRNAdeg.R
R/._Constructors.R
R/._TreeSetClasses.R
R/._bgcorrect.R
R/._dabg.call.R
...
man/._AffyRNAdeg.Rd
man/._AnalysisTreeSet-class.Rd
man/._CallTreeSet-class.Rd
man/._DataTreeSet-class.Rd
man/._ExprTreeSet-class.Rd
...
src/._rwrapper.cxx
src/._rwrapper.h
src/._xps.def
src/._xpsLinkDef.h
vignettes/._APTvsXPS.Rnw
vignettes/._BoxPlot_BgrdGC_bgrd.png
vignettes/._BoxPlot_BgrdMAS5_bgrd.png
vignettes/._BoxPlot_BgrdRMA.png
...
* checking package subdirectories ... WARNING
Subdirectory 'R' contains invalid file names:
'._AffyRNAdeg.R' '._Constructors.R' '._TreeSetClasses.R'
'._bgcorrect.R' '._dabg.call.R' '._dfw.R' '._export.R' '._express.R'
...
Subdirectory 'man' contains invalid file names:
'._AffyRNAdeg.Rd' '._AnalysisTreeSet-class.Rd'
'._CallTreeSet-class.Rd' '._DataTreeSet-class.Rd'
'._ExprTreeSet-class.Rd' '._Filter-class.Rd'
...
Does anyone know why these files are listed?
For some reason all these hidden files start with '._'
My suspicion was that maybe there is something wrong with Spotlight
(i.e. mdutil)
so I excluded the whole volume from Spotlight. This did not help. Adding
the volume
again and thus forcing a rebuild for Spotlight did not help either.
What could I do to remove these apparently non-existing hidden files?
Best regards
Christian
_._._._._._._._._._._._._._._._._._
C.h.r.i.s.t.i.a.n S.t.r.a.t.o.w.a
V.i.e.n.n.a A.u.s.t.r.i.a
e.m.a.i.l: cstrato at aon.at
_._._._._._._._._._._._._._._._._._
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