Re: [Rd] Windows 2000 crash while using rbind (PR#8225)

2005-10-20 Thread ripley
This is a stack-size issue. Windows provides only a small stack by default (2Mb in R 2.2.0). Your example will work in R-patched (which has a 10Mb stack) and R-devel (which has 10Mb and some stack-checking). The non-technical summary is that you ran out of resources. Fortunately we have been

Re: [Rd] Socks under R

2005-10-20 Thread Rainer M. Krug
That's brilliant! Thanks a lot for your help, Rainer Simon Urbanek wrote: > Rainer, > > On Oct 19, 2005, at 3:29 PM, Rainer M. Krug wrote: > >> when I use >> >> con1 <- socketConnection(...) >> >> in R and want to send text from another application written in Delphi >> to R, do I just have

Re: [Rd] [R-gui] R GUI considerations

2005-10-20 Thread Philippe Grosjean
Byron Ellis wrote: > [...] > Contrary to popular belief the speed of R's interpreter is rarely the > limiting factor to R's speed. People treating R like C is typically > the limiting factor. You have vector operations, USE THEM. Hey! I vote for a 'fortune' here! > [...] Otherwise, the disc

Re: [Rd] numerical issues in chisq.test(simulate=TRUE) (PR#8224)

2005-10-20 Thread Simone Giannerini
Hi, I obtain the same result under Win. XP SP2 on AMD 64 3700+ platform i386-pc-mingw32 arch i386 os mingw32 system i386, mingw32 status major2 minor2.0 year 2005 month10 day 06 svn rev 35749 language R > m <- matrix(c(1,0,7,15),2,2) ; chisq.test(m, sim=TRUE)$p.

[Rd] read.fwf doesn't work with header = TRUE (PR#8226)

2005-10-20 Thread Emmanuel . Paradis
Full_Name: Emmanuel Paradis Version: 2.1.1 OS: Linux Submission from: (NULL) (193.49.41.105) read.fwf(..., header = TRUE) does not work properly since: 1/ the original header is printed on the console and not in FILE; 2/ the different 'parts' of the header should be separated with tabs to wor

Re: [Rd] extending lattice to S4 classes

2005-10-20 Thread ernesto
Deepayan Sarkar wrote: >On 10/18/05, ernesto <[EMAIL PROTECTED]> wrote: > > >>Prof Brian Ripley wrote: >> >> >> >>>I think you are confusing us: xyplot is an S3 generic with no 'data' >>>argument. It is xyplot.formula that you want to add dispatch on its >>>'data' argument. I don't really

Re: [Rd] numerical issues in chisq.test(simulate=TRUE) (PR#8224)

2005-10-20 Thread maechler
Thank you, Douglas (and Simone) for the bug report. > "Simone" == Simone Giannerini <[EMAIL PROTECTED]> > on Thu, 20 Oct 2005 10:10:01 +0200 writes: Simone> Hi, Simone> I obtain the same result under Win. XP SP2 on AMD 64 3700+ Simone> platform i386-pc-mingw32 Simone>

Re: [Rd] is.na<- problem

2005-10-20 Thread Martin Maechler
> "Marc" == Marc Schwartz <[EMAIL PROTECTED]> > on Wed, 19 Oct 2005 20:28:05 -0500 writes: . >> > In reviewing the Green Book on the top of page 143, it shows an example >> > in which the RHS of the assignment are the indices into the LHS object >> > which ar

Re: [Rd] is.na<- problem

2005-10-20 Thread Marc Schwartz
On Thu, 2005-10-20 at 11:34 +0200, Martin Maechler wrote: > > "Marc" == Marc Schwartz <[EMAIL PROTECTED]> > > on Wed, 19 Oct 2005 20:28:05 -0500 writes: >. > > >> > In reviewing the Green Book on the top of page 143, it shows an > example > >> > in which the RH

Re: [Rd] [R-gui] R GUI considerations (was: R, Wine, and multi-threadedness)

2005-10-20 Thread Peter Kleiweg
James Wettenhall schreef op de 20e dag van de wijnmaand van het jaar 2005: [...] > providing a GUI to them, getting started in R is less > intimidating for them, so then we can hopefully spend less > time doing mundane numerical computing tasks for our > collaborators and have more time to do o

Re: [Rd] [R-gui] R GUI considerations (was: R, Wine, and multi-threadedness)

2005-10-20 Thread Thomas Friedrichsmeier
> If you want users to be productive, you have to give them > something they can easily incorporate within the tools they use > on a daily basis. No big applications with everything locked in, > but a set of programs or commands that do specific tasks, with > an easy to understand input and output.

[Rd] calling fortran from C

2005-10-20 Thread James Bullard
Hello, I had a question about calling some of R's fortran routines from C. Specifically, I would like to call: dqrfit from some C code which will be bundled as an R package. I was hoping someone knew of an example in some of R's code which does something like this (any fortran call from R's

Re: [Rd] [R-gui] R GUI considerations

2005-10-20 Thread Liaw, Andy
> From: Philippe Grosjean > > Duncan, > > I agree totally with you on all points, now that we clarified our > respective ideas. I am afraid I probably agree also with your last > point, from a theoretical point-of-view ("I still think we need more > glue and am working on that while we continu

Re: [Rd] calling fortran from C

2005-10-20 Thread Prof Brian Ripley
On Thu, 20 Oct 2005, James Bullard wrote: > > Hello, I had a question about calling some of R's fortran routines from C. > Specifically, I would like to call: dqrfit from some C code which will be > bundled as an R package. I was hoping someone knew of an example in some > of R's code which does s

Re: [Rd] calling fortran from C

2005-10-20 Thread Liaw, Andy
This is in R-exts. If the Fortran subroutine is called `dqrfit', you would use something like: F77_CALL(dqrfit)(...); All arguments need to be pointers, as Fortran passes by reference. Andy > From: James Bullard > > Hello, I had a question about calling some of R's fortran > routines from C.

Re: [Rd] calling fortran from C

2005-10-20 Thread Peter Dalgaard
"James Bullard" <[EMAIL PROTECTED]> writes: > Hello, I had a question about calling some of R's fortran routines from C. > Specifically, I would like to call: dqrfit from some C code which will be > bundled as an R package. I was hoping someone knew of an example in some > of R's code which

Re: [Rd] calling fortran from C

2005-10-20 Thread Charles C. Berry
Lapack.c is loaded with examples. Try $ cd $ grep "F77_CALL" ./src/modules/lapack/Lapack.c Did you see 5.6 Calling C from FORTRAN and vice versa in 'Writing R Extensions' ?? On Thu, 20 Oct 2005, James Bullard wrote: > > Hello, I had a question about calling some of R's fortran r

Re: [Rd] [R-gui] R GUI considerations

2005-10-20 Thread David Meyer
Philippe, > > I CC: this mail directly to the User!2006 organizing committee, > because it is a direct call asking for such a session. Regarding the > organizer, > I wouldn't propose names... someone from the R developer's team, or > a > key person in R GUIs topics... This topic should cer

Re: [Rd] numerical issues in chisq.test(simulate=TRUE) (PR#8224)

2005-10-20 Thread dgrove
Yes, only the middle matrix was problematic. Others were included to show what the value should (approx) be. Sorry that I didn't mention I was using 32 bit. There are of course very easy fixes to this, just wasn't sure what was the "best" approach in this situation (i.e. wasn't sure if the usu

[Rd] image() with all NAs fails (PR#8228)

2005-10-20 Thread barry . rowlingson
Full_Name: Barry Rowlingson Version: 2.2.0 OS: Linux Submission from: (NULL) (194.80.32.8) The image function with a matrix of all NA values fails with: > xyz=list(x=1:3,y=1:4,z=matrix(NA,3,4)) > image(xyz) Error in image.default(xyz) : invalid z limits In addition: Warning messages: 1: no finit

Re: [Rd] [R-gui] R GUI considerations (was: R, Wine, and multi-threadedness)

2005-10-20 Thread Walter Johnston
A couple of non-flame comments and a question - (1) I have used Smalltalk in various forms and recommend it highly as an environment (try Squeak for a free implementation); it is the origin of the model-view-controller paradigm for interaction with a GUI. Tcl/Tk is also nice with its event-driven

Re: [Rd] [R-gui] R GUI considerations (was: R, Wine, and multi-threadedness)

2005-10-20 Thread Jeffrey . J . Hallman
Walter Johnston <[EMAIL PROTECTED]> wrote on 10/20/2005 12:21:09 PM: > A couple of non-flame comments and a question - > > (1) I have used Smalltalk in various forms and recommend it > highly as an environment (try Squeak for a free implementation); > it is the origin of the model-view-controlle

Re: [Rd] [R-gui] R GUI considerations (was: R, Wine, and multi-threadedness)

2005-10-20 Thread Jeffrey J. Hallman
> "b" == Byron Ellis <[EMAIL PROTECTED]> writes: b> On Oct 19, 2005, at 3:43 PM, Jeffrey J. Hallman wrote: >> If you're looking for a GUI toolkit that: >> >> 1. Is cross-platform, >> 2. Has a good collection of widgets that look good on all >> platforms, and >> 3. Is easy to

[Rd] [R-gui] R GUI considerations (was: R , Wine, and multi-threadedness)

2005-10-20 Thread Thomas Friedrichsmeier
> Is there a "simple" way (e.g. some socket based mechanism) to > feed commands into R and retrieve the results of those commands? > This would require that I program the sequence of commands I > want to use (or a means to generate them) and then be able parse > the resulting structure - I understa

Re: [Rd] [R-gui] R GUI considerations (was: R, Wine, and multi-threadedness)

2005-10-20 Thread Duncan Murdoch
On 10/20/2005 12:21 PM, Walter Johnston wrote: > And the question: > > Is there a "simple" way (e.g. some socket based mechanism) to > feed commands into R and retrieve the results of those commands? > This would require that I program the sequence of commands I > want to use (or a means to gene

Re: [Rd] image() with all NAs fails (PR#8228)

2005-10-20 Thread murdoch
On 10/20/2005 12:41 PM, [EMAIL PROTECTED] wrote: > Full_Name: Barry Rowlingson > Version: 2.2.0 > OS: Linux > Submission from: (NULL) (194.80.32.8) > > > The image function with a matrix of all NA values fails with: > >> xyz=list(x=1:3,y=1:4,z=matrix(NA,3,4)) >> image(xyz) > Error in image.defau

Re: [Rd] [R-gui] R GUI considerations (was: R, Wine, and multi-threadedness)

2005-10-20 Thread Gabor Grothendieck
On 10/20/05, Walter Johnston <[EMAIL PROTECTED]> wrote: > > Is there a "simple" way (e.g. some socket based mechanism) to > feed commands into R and retrieve the results of those commands? > This would require that I program the sequence of commands I > want to use (or a means to generate them) an

[Rd] md5sum for R-2.2.0-win32.exe ??

2005-10-20 Thread Charles C. Berry
I get c1279b77fcccf40379f59a83523a440e *R-2.2.0-win32.exe but I see e8bdf765fe8013129045314c8e2605fd *rw2011.exe on several USA mirrors. I hope the latter is merely in need of a replacement and not an indication of a problem with the web sites. Chuck Charles C. Berry

[Rd] Error in building package indices

2005-10-20 Thread Jain, Nitin
Dear R-devel members, We are building a new package (GeneticsBase) for analysis of genetic data . While doing "R CMD check with R-2.1.1, I am getting the following error: ** building package indices ... Error in "colnames<-"(`*tmp*`, value = c("family", "pid", "father", "mother", : len

Re: [Rd] md5sum for R-2.2.0-win32.exe ??

2005-10-20 Thread Duncan Murdoch
On 10/20/2005 3:44 PM, Charles C. Berry wrote: > I get > > c1279b77fcccf40379f59a83523a440e *R-2.2.0-win32.exe > > but I see > > e8bdf765fe8013129045314c8e2605fd *rw2011.exe > > on several USA mirrors. > > I hope the latter is merely in need of a replacement and not an > indicati

Re: [Rd] image() with all NAs fails (PR#8228)

2005-10-20 Thread Prof Brian Ripley
On Thu, 20 Oct 2005 [EMAIL PROTECTED] wrote: > On 10/20/2005 12:41 PM, [EMAIL PROTECTED] wrote: >> Full_Name: Barry Rowlingson >> Version: 2.2.0 >> OS: Linux >> Submission from: (NULL) (194.80.32.8) >> >> >> The image function with a matrix of all NA values fails with: >> >>> xyz=list(x=1:3,y=1:4,

Re: [Rd] Error in building package indices

2005-10-20 Thread Prof Brian Ripley
There is not much context here, but it seems this is whilst trying to do an install. I would expect R CMD INSTALL to fail in the same place. It appears to indicate a bug in one of your datasets. On Thu, 20 Oct 2005, Jain, Nitin wrote: > Dear R-devel members, > > We are building a new package (

[Rd] plot.TukeyHSD (PR#8229)

2005-10-20 Thread ehlers
Full_Name: Peter Ehlers Version: "R version 2.2.0, 2005-10-19" OS: Windows XP Submission from: (NULL) (136.159.71.162) The newly added column of adjusted p-values in TukeyHSD output causes a problem with plotting the confidence intervals; an extraneous vertical line segment is plotted. plot.Tuk

Re: [Rd] md5sum for R-2.2.0-win32.exe ??

2005-10-20 Thread Peter Dalgaard
"Charles C. Berry" <[EMAIL PROTECTED]> writes: > I get > > c1279b77fcccf40379f59a83523a440e *R-2.2.0-win32.exe > > but I see > > e8bdf765fe8013129045314c8e2605fd *rw2011.exe > > on several USA mirrors. > > I hope the latter is merely in need of a replacement and not an > indicat

[Rd] UML + R

2005-10-20 Thread Seth Falcon
Hi all, I'm considering building some tools to generate UML diagrams of R packages. Q: Does anyone know of existing R code that does UML-ish stuff? Thanks, + seth __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel

[Rd] read.table error upon package installation (PR#8230)

2005-10-20 Thread Robert . McGehee
Upon upgrading to R 2.2.0 on my Windows box, I found that one of my packages no longer compiled, giving this error: Error in read.table(zfile, header =3D TRUE) : more columns than column names Execution halted After removing every line of code from my package and still not being able to c

Re: [Rd] UML + R

2005-10-20 Thread Gabor Grothendieck
The proto package can draw object inheritance diagrams. On 10/20/05, Seth Falcon <[EMAIL PROTECTED]> wrote: > Hi all, > > I'm considering building some tools to generate UML diagrams of R > packages. > > Q: Does anyone know of existing R code that does UML-ish stuff? > > > Thanks, > > + seth > > _

Re: [Rd] image() with all NAs fails (PR#8228)

2005-10-20 Thread Duncan Murdoch
Prof Brian Ripley wrote: > On Thu, 20 Oct 2005 [EMAIL PROTECTED] wrote: > > >>On 10/20/2005 12:41 PM, [EMAIL PROTECTED] wrote: >> >>>Full_Name: Barry Rowlingson >>>Version: 2.2.0 >>>OS: Linux >>>Submission from: (NULL) (194.80.32.8) >>> >>> >>>The image function with a matrix of all NA values fai

Re: [Rd] md5sum for R-2.2.0-win32.exe ??

2005-10-20 Thread Duncan Murdoch
Peter Dalgaard wrote: > "Charles C. Berry" <[EMAIL PROTECTED]> writes: > > >>I get >> >> c1279b77fcccf40379f59a83523a440e *R-2.2.0-win32.exe >> >>but I see >> >> e8bdf765fe8013129045314c8e2605fd *rw2011.exe >> >>on several USA mirrors. >> >>I hope the latter is merely in need of a repl

Re: [Rd] [R-gui] R GUI considerations (was: R, Wine, and multi-threadedness)

2005-10-20 Thread Byron Ellis
On Oct 20, 2005, at 9:21 AM, Walter Johnston wrote: > > And the question: > > Is there a "simple" way (e.g. some socket based mechanism) to > feed commands into R and retrieve the results of those commands? > This would require that I program the sequence of commands I > want to use (or a means

[Rd] Error in arima reporting (PR#8231)

2005-10-20 Thread stoffer
When arima is used to fit a time series, the output gives an estimate of the mean of the series, but calls it the intercept. For example, if x(t) = a + b x(t-1) + w(t) is a stationary AR(1) and w(t) is white noise, then mu = a + b mu, or a = mu (1-b), where mu = E(x(t)). Unless b=0, the mean mu

Re: [Rd] [R-gui] R GUI considerations (was: R, Wine, and multi-threadedness)

2005-10-20 Thread James Wettenhall
Hi again, Peter Kleiweg wrote: > To me, it does not make sense. When I have to work with > something like Word, I am intimidated by lots of buttons with > cryptic icons, with menus and submenus I can't make heads or > tails of, the program doing weird things with my text I don't > understand. A si

Re: [Rd] read.table error upon package installation (PR#8230)

2005-10-20 Thread ripley
What is the R error here? The default delimiter in read.table is not \t but whitespace, so the first example has 2 and 3 rows (fine for header=T) and the second has 2 and 4 rows. On Fri, 21 Oct 2005 [EMAIL PROTECTED] wrote: > Upon upgrading to R 2.2.0 on my Windows box, I found that one of my