Re: [Rd] CRAN package with dependencies on Bioconductor

2011-06-15 Thread Kornelius Rohmeyer
Am 15. Juni 2011 09:19 schrieb Uwe Ligges : > > > On 15.06.2011 01:21, Kornelius Rohmeyer wrote: >> >> 2011/6/11 Duncan Murdoch: >> [...] >>> >>> I don't understand.  It sounds as though you're saying these two >>> contradictory

Re: [Rd] CRAN package with dependencies on Bioconductor

2011-06-14 Thread Kornelius Rohmeyer
2011/6/11 Duncan Murdoch : [...] > I don't understand. It sounds as though you're saying these two > contradictory things: > > - your package works with any version of graph > - CRAN builds a version of graph that is incompatible with your package. No, the first statement is correct but not the

Re: [Rd] CRAN package with dependencies on Bioconductor

2011-06-11 Thread Kornelius Rohmeyer
2011/6/11 Prof Brian Ripley : > On Sat, 11 Jun 2011, Kornelius Rohmeyer wrote: >> 2011/6/11 Prof Brian Ripley : >>> Note that until May 8 graph was a CRAN packge and the current version was >>> 1.30.0. So of course CRAN binary packages built between April 26 and May &

Re: [Rd] CRAN package with dependencies on Bioconductor

2011-06-11 Thread Kornelius Rohmeyer
conductor? (And btw. is there a way to find out which versions of the dependent packages were used for building a certain binary package?) Thanks and best regards, Kornelius. > > On Fri, 10 Jun 2011, Martin Morgan wrote: > >> On 06/10/2011 05:46 PM, Kornelius Rohmeyer wr

Re: [Rd] CRAN package with dependencies on Bioconductor

2011-06-10 Thread Kornelius Rohmeyer
2011/6/11 Duncan Murdoch : > On 11-06-10 7:04 PM, Kornelius Rohmeyer wrote: >> Dear all, >> >> for a CRAN-package that depends on another Bioconductor-package I find >> two things annoying and would like to know whether there are some >> workarounds: >> >

Re: [Rd] CRAN package with dependencies on Bioconductor

2011-06-10 Thread Kornelius Rohmeyer
2011/6/11 Martin Morgan : > On 06/10/2011 05:46 PM, Kornelius Rohmeyer wrote: >> >> Dear Martin, >> >> thanks for your response. >> >>>> The superclass graphBase is introduced in graph 1.30. In my >>>> understanding the problem is that o

Re: [Rd] CRAN package with dependencies on Bioconductor

2011-06-10 Thread Kornelius Rohmeyer
Dear Martin, thanks for your response. >> The superclass graphBase is introduced in graph 1.30. In my >> understanding the problem is that our package gMCP is build on CRAN >> for R 2.12 with the package graph in version 1.30. Unfortunately >> biocLite installs graph_1.28.0.zip for R 2.12. > > bi

Re: [Rd] CRAN package with dependencies on Bioconductor

2011-06-10 Thread Kornelius Rohmeyer
I'm sorry for sending a wrongly formated mail before. This is the missing text: Dear all, for a CRAN-package that depends on another Bioconductor-package I find two things annoying and would like to know whether there are some workarounds: 1) Is there some inevitable problem that install.package

[Rd] CRAN package with dependencies on Bioconductor

2011-06-10 Thread Kornelius Rohmeyer
Dear all, for a CRAN-package that depends on another Bioconductor-package I find two things annoying and would like to know whether there are some workarounds: 1) Is there some inevitable problem that install.packages does not install uninstalled packages (on which the specified package depends)