Dear Martin, thanks for your response.
>> The superclass graphBase is introduced in graph 1.30. In my >> understanding the problem is that our package gMCP is build on CRAN >> for R 2.12 with the package graph in version 1.30. Unfortunately >> biocLite installs graph_1.28.0.zip for R 2.12. > > biocLite is returning the correct package -- graph 1.28.0. graph 1.30 did > not come in to existence until the most recent release, 2011-04-13, > approximately when R-2.13 became the current release version. > > CRAN is building packages with the current release, R-2.13, for which > biocLite and install.packages both (correctly) return graph 1.30. I doubt this, i.e. CRAN is also still building packages for R 2.12 - and is using graph 1.30 for this as far as I understand it (instead of 1.28). >> Are there ways to make dependencies on Bioconductor less complicated? > > Use the current version of R. So you agree that it is impossible to give a reasonable instruction to install such binary packages for older versions of R like the four month old R 2.12? (Reasonable means without manual installation of packages in the correct versions - where the correct versions have to be found out by the maintainer.) Best regards, Kornelius. ______________________________________________ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
