[PyMOL] PyMol display problem on Windows 10

2018-10-30 Thread Yufeng Tong
Hi there, I installed PyMol on a new laptop (Windows 10, within Anaconda3) and run into a display problem, which does not exist on a Windows 7 laptop. Basically, the displayed molecules does not have the 3D visual effect and the colors are very dark. Only after I apply "ray", it shows normal colo

Re: [PyMOL] PyMol display problem on Windows 10

2018-10-31 Thread Yufeng Tong
re is a simple workaround, PyMOL has two different > implementations of the lighting model and only one is affected. Type > this into the PyMOL command line or put it in your pymolrc file: > > set precomputed_lighting > > Cheers, > Thomas > On Tue, Oct 30, 2018 at 11:48 PM Yufen

Re: [PyMOL] representation of residue sidechain within a beta strand?

2021-01-28 Thread Yufeng Tong
Hi Tomas, I noticed this setting is not working when preset.pretty(selection='all') has been invoked, that is, whether cartoon_side_chain_helper is set to on or off, the side chain is disconnected. Do you know what is changed when preset.pretty() is called? The reason I want to call preset.pretty

[PyMOL] missing object control menu for new installation

2022-02-01 Thread Yufeng Tong
HI there, I am installing PyMOL on a virtual machine with Windows 10 Enterprise and tried a few different versions of PyMOL, for all of them I have the same problem of missing the "Object Control" menu in the GUI. Attached is a screen copy of the display. I have tried the following: 1. PyMOL 2.5 f