Hi Tomas, I noticed this setting is not working when preset.pretty(selection='all') has been invoked, that is, whether cartoon_side_chain_helper is set to on or off, the side chain is disconnected. Do you know what is changed when preset.pretty() is called?
The reason I want to call preset.pretty() is that if this is not called, the sticks representation of an isopeptide cannot be properly displayed (no sticks shown for the isopeptide bond), a bit of a dilemma. Thanks, Yufeng On Mon, Jan 18, 2021 at 3:35 AM Tomas Malinauskas <tomas.malinaus...@gmail.com> wrote: > > Hi Emilia, > > You might try the following: > set cartoon_side_chain_helper, on > > Hope that helps, > Tomas > > On Mon, Jan 18, 2021 at 7:52 AM Emilia C. Arturo (Emily) > <ecgart...@gmail.com> wrote: > > > > Hi All, > > > > I'm wondering if anyone here knows how to represent an amino acid residue > > side chain that resides within a beta strand in stick representation such > > that the residue is linked in space with the backbone. This works fine when > > representing as sticks a residue that is within a loop or helix, but not > > within a strand; there it just sticks out into space, which looks awful if > > the figure is not turned 'just so' so that the viewer cannot see the space. > > I am using version 2.4.0 on my Mac. > > > > Regards, > > Emilia. > > > > -- > > "Study as if you were going to live forever; live as if you were going to > > die tomorrow." - Maria Mitchell > > > > "I'm not afraid of storms for I'm learning to sail my ship." - Louisa May > > Alcott > > > > _______________________________________________ > > PyMOL-users mailing list > > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > > Unsubscribe: > > https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe > > > _______________________________________________ > PyMOL-users mailing list > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > Unsubscribe: > https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe _______________________________________________ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
