[PyMOL] Focus depth

2007-05-23 Thread Thomas Blicher
is in PyMOL (other than exporting files and rendering them in POVRay)? Best regards, Thomas Blicher

Re: [PyMOL] The CRT is dead, long live the ?

2007-06-21 Thread Thomas Blicher
m/displays.htm Best regards, Thomas Blicher -Original Message- From: pymol-users-boun...@lists.sourceforge.net [mailto:pymol-users-boun...@lists.sourceforge.net] On Behalf Of Esben Jannik Bjerrum Sent: 20. juni 2007 18:18 To: pymol-users@lists.sourceforge.net Subject: [PyMOL] The CRT is dead,

Re: [PyMOL] Changing a ring conformation

2008-06-15 Thread Thomas Blicher
Hi Rex, There is a simple fix to that: just break a bond somewhere in the ring using > unbond atom1, atom2 where '>' means the PyMOL command line, and 'atom1', 'atom2' are selections corresponding to two adjacent atoms in the ring. Then make your adjustments to the ring geometry and fina

[PyMOL] Protein orientation

2008-06-17 Thread Thomas Blicher
Dear PyMOL users, How do I orient the protein or camera relative to a predefined vector? The problem is this: I want to define a vector from the center of mass to a residue on the surface of my protein. I would then like to reorient the view (or my protein) to look along this vector. If done