[PyMOL] Import MRC files from http://3vee.molmovdb.org/index.php to pymol

2012-01-06 Thread Maximilian Ebert
. However, I can't isomesh the map. Does anybody knows how to compute MRC files from voss volume voxelator? Thanks, Dipl.-Ing. Maximilian Ebert Étudiant au doctorat en biochimie Laboratoire du Dr. Joelle Pelletier Université de Montréal m.eb...@umontre

Re: [PyMOL] Import MRC files from http://3vee.molmovdb.org/index.php to pymol

2012-01-07 Thread Maximilian Ebert
Hi Jason, if I use the program Chimera it directly situates the volume correctly in relation to the protein, therefore the position information must be somewhere in the MRC file. I have to admit that my pymol knowledge is not good enough to move the volume manually, I mean from Voss Volume Voxe

[PyMOL] Create a PDB file of a Biological Unit and keep secondary structure information

2012-01-07 Thread Maximilian Ebert
save 2RH2_tetra.pdb, all If I open this file the secondary structure of each monomer in the tetramer visualized by "show cartoon" isn't the same as before saving (i.e. beta-sheets length is different etc.). Any ideas why? Thank you very much, Dipl.-Ing. Maximilian Ebert Étu

Re: [PyMOL] Create a PDB file of a Biological Unit and keep secondary structure information

2012-01-07 Thread Maximilian Ebert
is information is preserved. > > When you load the saved PDB kg Pymol will calculate the secondary structure > by itself. > > I think it would be possible to copy the lines from the original PDB. > > Venlig hilsen > Folmer Fredslund > fra mobilen > > Den 08/01

[PyMOL] mpng and resolution in movies

2012-05-16 Thread Maximilian Ebert
Dear list, I try to export my Pymol movie as ray traced PNGs, which is working fine. However, Pymol always used as resolution the size of the canvas but I want to set a fixed resolution / image size. How can I tell pymol to export or generate PNGs with 1920x1080 resolution similar to the comman

Re: [PyMOL] mpng and resolution in movies

2012-05-23 Thread Maximilian Ebert
Hi List, just to tell you the solution I finally used: python for x in range(400): cmd.frame(x+1) cmd.ray(1920,1080) cmd.png("path/" + str(x+1) + ".png") python end Thank you, Max On 2012-05-16, at 4:46 PM, Maximilian Ebert wrote: > Dear list,