Re: [PyMOL] Pymol 1.3 and 1.6 compatability?

Hi Lapolla, Yes, you can keep your pymol v1.3 and v1.6. Just make sure that they have different names. You will also be able to open your old pse files. Cheers, Marcelo On Jan 14, 2014, at 12:18 PM, Lapolla, Suzanne M (HSC) wrote: > I would like to upgrade to Pymol 1.6 on my windows 7 64 bit

[PyMOL] pymol system ideal hardware

Hi PyMol community, Is there such thing as a site comparing hardware performance for PyMol? What would be the ideal system/OS to run PyMol? Best regards to all, Marcelo -- "Accelerate Dev Cycles with Automated Cross-Brow

Re: [PyMOL] Pymol wrl output

Hi Bob, Before you save your file from pymol try increasing the quality to max, then save as VRML. This increases the number of polygons in the file and after exporting from meshlab the final molecule will look a lot smoother. Cheers, Marcelo On May 2, 2014, at 2:15 PM, Grateful Frog wrote:

[PyMOL] Nvision stereo video export

Hi Everyone, If one has a functional Nvidia Nvision 3D setup, can you export a video that retains 3D? How is this done? Thanks in advance! Marcelo -- Open source business process management suite built on Java and Eclips

Re: [PyMOL] pymol 3D movies

Hi Christian, Thank you for taking the time to reply to this question and for offering your help. I am also interested in quad-buffered stereo play back. Would you be able to provide us with a bit more methodology information? It sounds like you have a script that helps you save the side-by-sid

Re: [PyMOL] pymol 3D movies

, schrieb Marcelo Marcet: >> Thank you for taking the time to reply to this question and for >> offering your help. I am also interested in quad-buffered stereo play >> back. > > Sorry, maybe I wasn't clear in my first mail: I don't have experience > with quad-buffered

[PyMOL] implementing focal_blur in movies

Dear PyMol community, I would like to create a movie with two objects where neither the camera nor the objects move. Instead, I would like to focus on the object closest to me while blurring out the background object and gradually bring the background into focus and blurring the closer object.

[PyMOL] making liposomes

Hi Everyone, Does anyone know of a way to generate/make liposome structures that can then be viewed in PyMol? Thanks, Marcelo -- Download BIRT iHub F-Type - The Free Enterprise-Grade BIRT Server from Actuate! Instantly

[PyMOL] creating a virus capsid using supercell.py

Hi Everyone, I have been trying to build a virus capsid using pymol. The biological unit for the complete structure is not available. :( My first attempt at getting this done was by using the “rotate” and “translate” commands. Unfortunately, these commands can only move objects either relative

Re: [PyMOL] creating a virus capsid using supercell.py

s shows the models. > > If there is something wrong with the assembly file - then by all means > contact the PDB... > > Ezra > > > On Fri, Apr 17, 2015 at 1:34 AM, Marcelo Marcet <mailto:mmar...@nait.ca>> wrote: > Hi Everyone, > > I have been tryin

Re: [PyMOL] (no subject)

Hi Leila, Take a look at the link below: https://www.pymol.org/citing Cheers, Marcelo > On Apr 18, 2015, at 11:55 PM, leila karami wrote: > > Dear all > > How to cite pymol in my paper? > > Thanks. > -

Re: [PyMOL] (no subject)

Hi Leila, No problem, here is the content of the site. If you need the reference manager files (BibTex or EndNote files), I am happy to email them to you as well. Cheers, Marcelo Citation Format Please cite PyMOL, AxPyMOL and JyMOL as shown below. Be sure to edit the version number in acco

[PyMOL] moving objects

Hi Pymol Users, I have 2 objects (objects 1 and 2) and I would like to re-orient object 1 so that the distance from either end of object 1 becomes the same to object 2 (see image). Is there a way to achieve this in PyMol? I have tried using the mouse in edit mode and I have tried using the rot