[PyMOL] L->D amino acid conversion using pymol

ert error: couldn't find basis for inversion. The same applies when trying via command line (example for residue one): PyMOL> edit 1/ca PyMOL> invert 1/n, 1/ca invert error: couldn't find basis for inversion What am I doing wrong ? Kind regards Uwe Hobohm Heinz-Uwe Hobohm

[PyMOL] L->D amino acid conversion using pymol

ert error: couldn't find basis for inversion. The same applies when trying via command line (example for residue one): PyMOL> edit 1/ca PyMOL> invert 1/n, 1/ca invert error: couldn't find basis for inversion What am I doing wrong ? Kind regards Uwe Hobohm Heinz-Uwe Hobohm

[PyMOL] sorry for posting multiple times...

...Mac-mail did not propagate the message from out-folder to sent-folder for unknown reasons. Uwe

[PyMOL] Homologous modelling

Hi, assume you have a protein structure (P1) and a second protein sequence (S1) without structure. Both sequences align with about 50% sequence identity over a large portion of both sequences without gaps (Smith+Waterman). Is there a way to automatically exchange residues from P1 against the

Re: [PyMOL] Homologous modelling

Thanks for the replies on my "How to spoil PyMol for modelling" request. Despite Peitzsch's SwissModel (very convenient) and Sali's Modeller (less convenient but perhaps more precise ?) I would like to know, for educational purposes, whether PyMol could do reasonably well also. To be more pre