Dear Maria,
I don’t think there is a direct way to connect two sessions together. One
thought I had is that you could save coordinates from one session and then same
coordinates from the other session.
lastly, open an another session and do the following:
load state1.pdb
load state2.pdb, sta
Dear Yu,
Try this bash script and then run "pymol all.pdb” in your PDB directory. this
might help you view your files as a trajectory.
for i in {1..3000}
do
# change frame_$i.pdb to your file name. for example mine is frame_1.pdb
[ -f "frame_$i.pdb" ]
z=frame_$i.pdb
se
select pos,(resn arg+lys+his)
show sticks, (pos and !name c+n+o)
color marine,pos
disable pos
select neg,(resn glu+asp)
show sticks, (neg and !name c+n+o)
color red,neg
disable neg
select neutral, (resn
gly+ala+val+ile+leu+met+ser+cys+trp+phe+tyr+pro+gln+asn+phe)
show sticks, (neutral and !name c
e you tried this type of simple model: q1q2/4*Pier^2
Best Regards,
David
> Thank you again!
> Have a good day.
> Clarisa.
>
> El mié., 9 sept. 2020 a las 19:11, David Gae ( <mailto:dd...@ucdavis.edu>>) escribió:
>
> select pos,(resn arg+lys+his)
> show stick
.
I hope a lot more experts can do the same for people who are teaching molecular
modeling or learning PyMOL.
Sincerely,
David Gae
> On Apr 30, 2021, at 7:14 AM, Thomas Holder
> wrote:
>
> Dear PyMOL community -
>
> The time has come for me to hand over my PyMOL development
