[PyMOL] problems cloring sticks

Hi Pymolers, I am having problems coloring residues when they are shown as stick. The coloring is properly working for the other representations like, lines, surface or spheres. I am using Pymol 1.2r2 under Ubuntu 11,04. Thanks in advanced, best regrads, Ariel ---

Re: [PyMOL] problems cloring sticks

solution on our side that fixes this, I'll update the > open-source. > > Cheers, > > -- Jason > > On Wed, Jun 1, 2011 at 12:04 PM, Ariel Talavera wrote: > > Hi Pymolers, > > > > I am having problems coloring residues when they are shown as stick. The &g

Re: [PyMOL] problems cloring sticks

Hi Jason, How can I download Pymol's last night version? So far, the command line "set use_shaders, 1" soleved the stick coloring problem for my pymol 1.4.1 on Ubuntu 11.04. Thanks a lot for your help. Cheers, ariel On Thu, 2011-06-09 at 10:16 -0500, Jason Vertrees wrote: > PyMOL to last night

Re: [PyMOL] problems cloring sticks

workaround. (The colors are being set properly, but the video card isn't picking them up.) Cheers, -- Jason On Wed, Jun 1, 2011 at 12:04 PM, Ariel Talavera mailto:talav...@cim.sld.cu>> wrote: > Hi Pymolers, > > I am having problems coloring residues when they are shown as sti

[PyMOL] map for one molecule

Hi Pymolers, Is it possible to load a map to only cover the molecule and not the complete asymmetric unit? Or is this only possible at the time of creating the map? Thanks in advanced, Ariel -- * Ariel Talavera Pérez, PhD Center of Molecular

[PyMOL] color by element

Hi Pymolers, How can I use the color by element (HNOS) function present in the GUI, in a script? Thanks in advanced, Best, Ariel -- * Ariel Talavera Pérez, PhD Center of Molecular Immunology calle 216 esq. A 15, Atabey, Playa Havana 11600, CUBA

[PyMOL] stick transparency

Hi there, I am trying to set stick transparency using the following command: set stick_transparency, 0.5, peg_1, but with no success. The problem is with the selection, because if I use instead, set stick_transparency, 0.5, then every thing represented with stick get 50% transparent. Can you help

Re: [PyMOL] stick transparency

ax:(212)645-2054 > > > > -Original Message- > > From: Ariel Talavera [mailto:talav...@cim.sld.cu] > > Sent: Friday, May 21, 2010 12:26 PM > > To: Matthew Franklin > > Subject: RE: [PyMOL] stick transparency > > > > Thanks for the very qui

Re: [PyMOL] stick transparency

ew York, NY 10014 > phone:(917)606-4116 fax:(212)645-2054 > > > > -Original Message- > > From: Ariel Talavera [mailto:talav...@cim.sld.cu] > > Sent: Friday, May 21, 2010 12:26 PM > > To: Matthew Franklin > > Subject: RE: [PyMOL] stick transparency > >

Re: [PyMOL] stick transparency

that I use 1.2r1 on xinXP > > It could be a version difference if the command does not work correctly for > > you. > > > > On Fri, May 21, 2010 at 11:50 AM, Ariel Talavera > > wrote: > >> > >> Hi again, > >> > >> Actually it seem