Hi all, Thanks a lot. It worked great.
Cheers, Ariel On Sat, 2010-05-22 at 13:45 -0500, Jason Vertrees wrote: > Hi all, > > Don't worry it's still there, just under a different command. > Stick_color, stick_transparency, etc are properties of bonds, so it's > best to now use 'set_bond' intead of 'set'. For example, > > set_bond stick_transparency, 0.5, objectName > > Cheers, > > -- Jason > > > On Fri, May 21, 2010 at 3:13 PM, Michael Zimmermann > <micha...@iastate.edu> wrote: > > Sorry, I didn't mention that I use 1.2r1 on xinXP > > It could be a version difference if the command does not work correctly for > > you. > > > > On Fri, May 21, 2010 at 11:50 AM, Ariel Talavera <talav...@cim.sld.cu> > > wrote: > >> > >> Hi again, > >> > >> Actually it seems that for some reason the comma after the value (0.5) > >> invalidate the command line. > >> > >> Ariel > >> > >> On Fri, 2010-05-21 at 11:40 -0500, Matthew Franklin wrote: > >> > (I'm putting this back on-list) > >> > > >> > That's too bad. It worked for me: PyMOL 1.2r2, Windows XP. Can you set > >> > other properties of this object: color, stick_radius, etc.? > >> > > >> > - Matt > >> > > >> > > >> > > >> > -- > >> > Matthew Franklin , Ph.D. > >> > Senior Scientist, ImClone Systems, > >> > a wholly owned subsidiary of Eli Lilly & Company > >> > 180 Varick Street, 6th floor > >> > New York, NY 10014 > >> > phone:(917)606-4116 fax:(212)645-2054 > >> > > >> > > >> > > -----Original Message----- > >> > > From: Ariel Talavera [mailto:talav...@cim.sld.cu] > >> > > Sent: Friday, May 21, 2010 12:26 PM > >> > > To: Matthew Franklin > >> > > Subject: RE: [PyMOL] stick transparency > >> > > > >> > > Thanks for the very quick answer, but it didn't succeed. > >> > > > >> > > Best, > >> > > Ariel > >> > > > >> > > On Fri, 2010-05-21 at 11:18 -0500, Matthew Franklin wrote: > >> > > Hi Ariel - > >> > > > >> > > Try "set stick_transparency=0.5, peg_1" > >> > > > >> > > - Matt > >> > > > >> > > > >> > > -- > >> > > Matthew Franklin , Ph.D. > >> > > Senior Scientist, ImClone Systems, > >> > > a wholly owned subsidiary of Eli Lilly & Company > >> > > 180 Varick Street, 6th floor > >> > > New York, NY 10014 > >> > > phone:(917)606-4116 fax:(212)645-2054 > >> > > > >> > > > -----Original Message----- > >> > > > From: Ariel Talavera [mailto:talav...@cim.sld.cu] > >> > > > Sent: Friday, May 21, 2010 12:01 PM > >> > > > To: pymol-users@lists.sourceforge.net > >> > > > Subject: [PyMOL] stick transparency > >> > > > > >> > > > Hi there, > >> > > > > >> > > > I am trying to set stick transparency using the following command: > >> > > > set stick_transparency, 0.5, peg_1, but with no success. The problem > >> > > > is > >> > > > with the selection, because if I use instead, set > >> > > > stick_transparency, > >> > > > 0.5, then every thing represented with stick get 50% transparent. > >> > > > Can > >> > > > you help with this? I am using Pymol 1.2 under Ubuntu 10.04. > >> > > > > >> > > > Thanks a lot in advanced, > >> > > > > >> > > > Best regards, > >> > > > Ariel > >> > > > > >> > Confidentiality Note: > >> > This e-mail, and any attachment to it, contains privileged and > >> > confidential information intended only for the use of the individual(s) > >> > or > >> > entity named on the e-mail. If the reader of this e-mail is not the > >> > intended > >> > recipient, or the employee or agent responsible for delivering it to the > >> > intended recipient, you are hereby notified that reading it is strictly > >> > prohibited. If you have received this e-mail in error, please immediately > >> > return it to the sender and delete it from your system. > >> > > >> > Thank you. > >> > >> > >> > >> > >> ------------------------------------------------------------------------------ > >> > >> _______________________________________________ > >> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > >> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > >> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > > > > > > > > -- > > Michael Zimmermann > > Ph.D. student in Bioinformatics and Computational Biology > > Department of Biochemistry, Biophysics and Molecular Biology > > Iowa State University > > > > ------------------------------------------------------------------------------ > > > > > > _______________________________________________ > > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > > > > > ------------------------------------------------------------------------------ _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
