Thank you Blaine!
Now I know why, and how to manually fix this.
> On Mar 20, 2020, at 10:52 PM, Mooers, Blaine H.M. (HSC)
> wrote:
>
> The O3' to P bond lengths are 2.2 Angstroms when they should 1.6 Angstroms.
> This is outside the bond length range that PyMOL accepts so the bond is
> absent
Thank you Jared!
The commands didn’t work, but at least I now know why, and how to manually fix
this.
> On Mar 20, 2020, at 10:37 PM, Jared Sampson
> wrote:
>
> Hi Adam -
>
> That's a fun one. It appears that most of these O3' atoms are not bonded to
> the P atom of the following nucleoti
Hi Adam,
On my first attempt with Jared's commands, I pasted both for loops at the top
PyMOL prompt with a semicolon between the commands.
This failed because I created a Python syntax error.
When I issued Jared's commands one at a time, they worked.
Alternatively, rewrite Jared's for loops as
Well, thank you very much Blaine! That worked great!
> On Mar 22, 2020, at 10:01 AM, Mooers, Blaine H.M. (HSC)
> wrote:
>
> Hi Adam,
>
> On my first attempt with Jared's commands, I pasted both for loops at the top
> PyMOL prompt with a semicolon between the commands.
> This failed because I
