Thank you Blaine! Now I know why, and how to manually fix this.
> On Mar 20, 2020, at 10:52 PM, Mooers, Blaine H.M. (HSC) > <blaine-moo...@ouhsc.edu> wrote: > > The O3' to P bond lengths are 2.2 Angstroms when they should 1.6 Angstroms. > This is outside the bond length range that PyMOL accepts so the bond is > absent when you display the model as line or stick model. > This is why the cartoon is missing or broken. > 5FUR is a 8.5 Angstrom cryo EM structure. > Perhaps the associated paper explains this discrepancy. > > Best regards, > > Blaine > > Blaine Mooers, Ph.D. > Associate Professor > Department of Biochemistry and Molecular Biology > College of Medicine > University of Oklahoma Health Sciences Center > S.L. Young Biomedical Research Center (BRC) Rm. 466 > 975 NE 10th Street, BRC 466 > Oklahoma City, OK 73104-5419 > > ________________________________________ > From: h. adam steinberg [h.adam.steinb...@gmail.com] > Sent: Friday, March 20, 2020 8:57 PM > To: pymol-users > Subject: [EXTERNAL] [PyMOL] broken DNA cartoon > > Hi All, > > When I open 5FUR either from my drive or via fetch, the DNA cartoon is broken > and mostly missing (it should span from left to right). Any ideas on how to > get the cartoon to work? > > Pymol version 2.3.4 > > _______________________________________________ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
