[PyMOL] Selection markers not shown

2017-07-03 Thread AndrĂ¡s Ferenc WACHA
Dear PyMOL Users, I'm using a Lenovo Thinkpad T410 notebook with the integrated intel video card. I found that when I select something, the little purple boxes are not shown. The operating system is Arch Linux, and I use the most recent packages available. Pymol v1.8.6.0 prints the following at t

[PyMOL] Valence bonding ray trace in batch mode

2017-07-03 Thread Gianluca Tomasello
Hi, I am trying to execute a script that sets valence bonding on sticks and then it gives me back a rendered image. There seems there is a difference when i try to run the script normally or in batch mode (pymol -cq script.py). If i run it in batch mode, each atom with a double bond is rendered wi