[PyMOL] Transparent Background in Educational Version

Hello, my name is Cris and I am attempting to save a version of my protein with a transparent background. I have tried using the commands set ray_opaque_background, off png test.png, dpi=300 but this doesn't seem to work. I have the educational version of PyMol, is this the reason that I'm una

Re: [PyMOL] Connectivity

Hi Laurie, The list of bonds is accessible with cmd.get_model(), see https://pymolwiki.org/index.php/Get_Model PyMOL> m = cmd.get_model() PyMOL> print m.bond[0].index [0, 1] PyMOL> print m.bond[0].order 1 Cheers, Thomas On 26 Jan 2017, at 13:50, Laurence Williams wrote: > Dear pymol users,

Re: [PyMOL] Transparent Background in Educational Version

Hi Cris Please include the ray=1 option in your png test.png, dpi=300 command or use the set opaque_background, off instead of the set ray_opaque_background, off command. Commands to create a PNG file with a transparent background: set opaque_background, off png test.png, dpi=300, ray=1 *PNG fi