Hi Laurie, The list of bonds is accessible with cmd.get_model(), see https://pymolwiki.org/index.php/Get_Model
PyMOL> m = cmd.get_model() PyMOL> print m.bond[0].index [0, 1] PyMOL> print m.bond[0].order 1 Cheers, Thomas On 26 Jan 2017, at 13:50, Laurence Williams <williams...@cardiff.ac.uk> wrote: > Dear pymol users, > > I understand that pymol does not explicitly need connectivity data to > visualise molecules as bonds are drawn when two atoms are within in a given > distance. However, once those bonds are drawn for the molecule, is > connectivity data stored somewhere whilst the file is in use? I ask with the > aim to extract that data into a python object. > > Thanks > Laurie -- Thomas Holder PyMOL Principal Developer Schrödinger, Inc. ------------------------------------------------------------------------------ Check out the vibrant tech community on one of the world's most engaging tech sites, SlashDot.org! http://sdm.link/slashdot _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
