[PyMOL] Problem with ribbon

Hi All & Thomas There appears to be a problem with ribbon representations. I am testing MacPyMOL on v 1.8.1.1 but the same behavior is seen with 1.8.0.4. Create a ribbon of a test protein, for example, show ribbon, test and (resi 10:20 or resi 25:35) Double click on the endp

Re: [PyMOL] Problem with ribbon

Hi Mark, Thanks for the bug report. Confirming that this is a picking bug with ribbon_as_cylinders=1, affecting 1.8.0.0 and later. Picking works correct for me with ribbon_as_cylinders=0 (default). Thomas On 05 Apr 2016, at 10:47, Mark A Saper wrote: > Hi All & Thomas > > There appears to b

[PyMOL] Cryo Maps - gaussian isosurface

Hi All, I’m trying to make an isomesh of EMD-6413 (a cryo map) in Pymol. It’s a large map with a lot of extra, not very clean. In Chimera I can just gaussian the map with a new map to the level I want with a slider and it looks good, but I’d much rather work in PyMOL! PyMOL can gaussian maps,

[PyMOL] shadows commands

Hi All, I’m trying to write scripts that include shadow options. In the menus at the top of the program users can choose: Setting/Rendering/Shadows and then they can pick: None, light, medium, heavy, black, matte, soft, occlusion 1, and occlusion 2. How do I put those shadows into a script? (I

[PyMOL] 1st Call For Papers - 23rd Annual Tcl/Tk Conference (Tcl'2016)

Hello pymol-users, fyi ... 23rd Annual Tcl/Tk Conference (Tcl'2016) http://www.tcl.tk/community/tcl2016/ November 14 - 18, 2016 Crowne Plaza Houston River Oaks 2712 Southwest Freeway, 77098 Houston, Texas, USA Important Dates: Abstracts and proposals due September 12, 2016 Notification to au

Re: [PyMOL] shadows commands

Hi Adam: The commands for shadow rendering are: util.ray_shadows('black') util.ray_shadows('heavy') util.ray_shadows('medium') util.ray_shadows('light') util.ray_shadows('none') How to find out what commands a menu item corresponds to: Set a log file (Pull-down Menu File:Log…). As you select di