[PyMOL] bonding nucleic acid bases

Hi all, If I create a string of double-strand DNA, or take a string of double-strand DNA or RNA from a structure, is there any automated way to have the bases link AT, UA, GC, so when I manually sculpt or deform the DNA those bases would stay together? I could go through the structure and manu

Re: [PyMOL] installing other libraries with pymol python

Hi Jordan, if you want to use MacPyMOL with other libraries then I recommend to use the "syspython" version that we offer (installer named MacPyMOL-v1.7.x.x-syspython.dmg). It simply does not bundle a Python distribution, but uses /usr/bin/python2.7 to run MacPyMOL. Related: https://sourceforg

Re: [PyMOL] installing other libraries with pymol python

Wow that is so cool. Is there any drawbacks I can expect? > On Jun 23, 2015, at 1:44 PM, Thomas Holder > wrote: > > Hi Jordan, > > if you want to use MacPyMOL with other libraries then I recommend to use the > "syspython" version that we offer (installer named > MacPyMOL-v1.7.x.x-syspython.

[PyMOL] Race condition when running scripts in "stdin" mode

Hi, on Debian, we got a bug report which looks like the bug reported here as well: http://sourceforge.net/p/pymol/bugs/130/ Unfortunately, there has been no discussion of this bug so far. There seems to be some race condition for scripts, does anybody a work-around, and/or fix for this? Or is t

Re: [PyMOL] installing other libraries with pymol python

Hi Jordan, I think there are no drawbacks, I'm using this version for several months now and it works great. Of course such a question is hard to answer a-priori, that's why we didn't simply replace the regular bundle but offer the "syspython" version in addition. Cheers, Thomas On 23 Jun 2

Re: [PyMOL] Race condition when running scripts in "stdin" mode

Hi MIchael, I can reproduce the error on a machine with Ubuntu 15.04 (64 bits) and PyMOL 1.7.2 On Tue, Jun 23, 2015 at 7:13 PM, Michael Banck wrote: > Hi, > > on Debian, we got a bug report which looks like the bug reported here as > well: http://sourceforge.net/p/pymol/bugs/130/ > > Unfort

[PyMOL] bonding nucleic acid bases

Hi all, If I create a string of double-strand DNA, or take a string of double-strand DNA or RNA from a structure, is there any automated way to have the bases link, AT, UA, GC, so when I manually sculpt or deform the DNA those bases would stay together? I could go through the structure and man