Re: [PyMOL] Access API without the GUI

Surely there must be a way to run Pymol in a mode that does not fire up the GUI but still allows it access to OpenGL?? > Michael, > > The "-c" option forces PyMOL to run in command-line-only mode which means it > doesn't have access to the OpenGL hardware (used by cmd.draw and interactive > gra

[PyMOL] how to solvate a protein in a box with water?

Hi, I am a new user of pymol. My question is how to solvate a protein in a box with water? Thanks, Tumpa Sadhukhan. Ph.D Scholar, IIT Bombay, India. -- Download BIRT iHub F-Type - The Free Enterprise-Grade BIRT Server

[PyMOL] how to solvate a protein in a box with water?

Hi, I am a new user of pymol. My question is how to solvate a protein in a box with water? Thanks, Tumpa Sadhukhan. Ph.D Scholar, IIT Bombay, India. -- Download BIRT iHub F-Type - The Free Enterprise-Grade BIRT Serve

Re: [PyMOL] how to solvate a protein in a box with water?

Hi, I am not aware of the possibility to do that using PyMOL (unless someone has implemented a plugin/script to do so). I guess you want solvate a molecule to perform a Molecular Dynamics simulation, in that case you could use Gromacs to solvate and simulate your system. You could also use this pl