Hi,
I am not aware of the possibility to do that using PyMOL (unless someone
has implemented a plugin/script to do so).
I guess you want solvate a molecule to perform a Molecular Dynamics
simulation, in that case you could use Gromacs to solvate and simulate your
system. You could also use this plugin
<http://www.pymolwiki.org/index.php/GROMACS_Plugin> to setup your Gromacs
simulation using PyMOL as a GUI.
Best Regards,
Osvaldo.
On Tue, Nov 18, 2014 at 12:27 PM, <t.sadhuk...@chem.iitb.ac.in> wrote:
Hi,
> I am a new user of pymol. My question is how to solvate a protein in a
> box with water?
>
> Thanks,
> Tumpa Sadhukhan.
> Ph.D Scholar,
> IIT Bombay,
> India.
>
>
>
>
>
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