I have a potential map of a protein and I would like to have a border
between a specific residue while the map keeps unchanged.
I have thought about making a new object of the residue and tried to
find a command similar to:
set label_outline_color, black
but I can't find one.
Do you have any id
Seems to be working!
Thanks,
Matt
On 07/23/2014 02:33 PM, Thomas Holder wrote:
> Hi Matt,
>
> I pushed a fix to SVN rev 4084.
>
> Cheers,
>Thomas
>
> On 23 Jul 2014, at 14:06, Thomas Holder wrote:
>
>> Hi Matt,
>>
>> thank you for the bug report. We will fix this as soon as possible.
>>
>> Ch
Hi Ooker -
As I understand it, you want to overlay a line to show which part of the
surface belongs to which residue. There is currently no way to do this
directly within PyMOL. However, is possible to achieve something similar using
multiple layers in a composite image. See this previous th
Hello Pymol users,
As anyone experienced an instance where the surface transparency remained
stuck in one color? I changed it to pink a while back. However, now issuing
the comand:
set surface_color, green, object1
does nothing. Object1 is the object I want to color. Even if I try to
change the
I think the problem may have to do with the surface_cavity_mode being set
to 3. I try to change the surface_cavity_mode but I still detect cavities
instead of the surface. It seems like any option related to the surface is
locked.
-Yarrow
---
Hi Pymolers
I have solved my problem. I am using surface cavity_mode, 3. I need to
change the ray_interior_color instead of the surface color. I guess this
is because pymol is visualizing the interior of the surface not the
exterior.
-Yarrow
On Thu, Jul 24, 2014 at 11:08 AM, Yarrow Madrona wr
Hi Jared, thanks for your efford. Just to add more information, if you
have to do it many times, you'd better overlay the border by a script.
You can use ImageMagick or GraphicMagick to do that.
composite -gravity center overlay.png base.png base_with_border.png:
See http://www.imagemagick.org/scr
