[PyMOL] Pymol insertion code

Hi, I'm new to Pymol and am looking at the structure of pepsinogen (PDB: 3psg). This protein contains a 44 residue prodomain, which the pdb file says is assigned an insertion code 'P' and labelled 1 - 44. This prodomain is cleaved to yield pepsin (5pep), whose sequence is labelled 1 - 326. I gat

Re: [PyMOL] Pymol insertion code

Hi Nick - This PDB employs non-standard usage of the PDB insertion code column. Typically, it is used to insert one or more residues between adjacent numbers in a canonically numbered structure, e.g. residue 42A (along with 42B, 42C, … , 42P, etc.) is between residues 42 and 43. As for whethe

[PyMOL] How to apply "cartoon_side_chain_helper" only to selection

Hello to PyMOL mailing list. I'm writing a python script using PyMOL as module. I want to set "*cartoon_side_chain_helpe = on*" globally and, only for residues inside a list (*chosen_residues_replacement_list*), I want to set "*cartoon_side_chain_helpe = off*". For this purpuse, I'm trying to us

Re: [PyMOL] How to apply "cartoon_side_chain_helper" only to selection

Hi Riccardo, cartoon_side_chain_helper has been implemented as an atom level setting only in the latest Incentive version of PyMOL (1.7.0.0 Incentive PyMOL). Cheers, Thomas On 20 Mar 2014, at 12:05, Riccardo wrote: > Hello to PyMOL mailing list. > > I'm writing a python script using PyMOL a

Re: [PyMOL] Pymol insertion code

Sorry - one quick correction to my previous email: On Mar 20, 2014, at 10:50 AM, Sampson, Jared wrote: > If you don’t need the cartoon representation to be continuous (e.g. if you’re > zooming in on a different section of the protein you can replace the 3rd line > with: > > alter prodomain, c

Re: [PyMOL] How to apply "cartoon_side_chain_helper" only to selection

Good! Responding to my question, It's possible also into the open-source PyMOL version: I found thistopic. You need to *duplicate *the pdb entry as *object*, and apply "*cartoon_side_chain_helper = off*" to the first ob