Sorry - one quick correction to my previous email:

On Mar 20, 2014, at 10:50 AM, Sampson, Jared <jared.samp...@nyumc.org> wrote:

> If you don’t need the cartoon representation to be continuous (e.g. if you’re 
> zooming in on a different section of the protein you can replace the 3rd line 
> with:
> 
> alter prodomain, chain=“P”
> 
> to split off the prodomain into a separate chain.  In this case, the sequence 
> will be numbered as in the PDB, only without the insertion code.

The numbering will be exactly as in the PDB, only the chain ID will differ.

Cheers,
Jared


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