[PyMOL] Pymol cannot load pdb file

Hi, Recently, when I use pymol to load one pdb file, I got the following error and the Pymol is closed. I install pymol from soure code, and it worked no problem . Who can give me some advice ? thanks a lot. Jacky # the error strart here HEADERPRION PROTEIN 31-MAR

Re: [PyMOL] Pymol cannot load pdb file

Hi Jacky, Do you encounter the same error with other PDB files? If not, can you check the file? If you don't find anything obviously wrong, can you post this PDB file somewhere where we can access it? If you do get the same error with other files, but you didn't have it before, you may have corrup

Re: [PyMOL] Pymol cannot load pdb file

Hi Tsjerk, Thanks for your comment, I found the reason of this error. After I post the last mail, had noticed the error message at below: $ pymol 1ag2.pdb > OpenGL Warning: Failed to connect to host. Make sure 3D acceleration is > enabled for this VM. > libGL error: failed to load driver: vboxvi

[PyMOL] show atoms as circle

Dear all,I want to draw CA atoms of a peptide as circles, but not spheres. How can I do that? Thanks Yeping Sun Institute of Microbiology, Chinese Academy of Sciences -- Rapidly troubleshoot problems before they affect you

Re: [PyMOL] show atoms as circle

Hi Yeping, PyMOL> show spheres, name CA PyMOL> set sphere_mode, 3 an eventually (example numbers): PyMOL> set sphere_point_max_size, 100 PyMOL> set sphere_scale, 0.5 Hope that helps. Cheers, Thomas On 06 Jan 2014, at 09:34, sunyeping wrote: > Dear all, > > I want to draw CA atoms of a pe