Re: [PyMOL] How Pymol reads a dcd file

2013-07-11 Thread Thomas Holder
Hi Syeda, PyMOL doesn't read PSF files, you need to provide the topology as PDB or any other format known to PyMOL. The DCD trajectory can be loaded with "load_traj", after loading the topology: PyMOL> load topology.pdb, somename PyMOL> load_traj trajectory.dcd, somename, 1 See also: http://pym

[PyMOL] extreme projections

2013-07-11 Thread Ahmet yıldırım
Dear users, I extracted extreme projections using the Gromacs tool "g_anaeig". I did make pictures which show the difference but I could not do as I want them. Can you help me? Thanks in advance -- Ahmet Yıldırım -- See