Re: [PyMOL] PyMOL 1.6 pre-release announcement

2013-06-20 Thread Jason Vertrees
Hi David, If you save a session file in the latest version of PyMOL there is never the expectation that prior versions can read that file. Such "forward compatibility" (of the older versions) is not supported. We do support, however, "backward compatibility" which is when newer versions of PyMOL r

Re: [PyMOL] Problems with Pymol v 1.6.0.0

2013-06-20 Thread Matthew Baumgartner
Hi, Adding to thread. I'm using pymol 1.6 (built from svn yesterday) on Ubuntu 13.04. I've noticed that the selection indicators are not working properly. Steps to reproduce: #launch ignoring the config file pymol -k #in pymol >fetch 1YCR Then open sequence viewer and select a range of residue

Re: [PyMOL] PyMOL 1.6 pre-release announcement

2013-06-20 Thread Robert Hanson
(yes, I meant "forward compatibility" there) Jason, in our 100+ PyMOL session files that we can now read into Jmol we have a few files that don't seem to have backward compatibility to PyMOL 1.3 from the open source version 1.6.0.0. Mostly it has to do with CGOs and measurements. Should I just sen

Re: [PyMOL] PyMOL 1.6 pre-release announcement

2013-06-20 Thread Jason Vertrees
Bob, Sure, feel free to send those to Thomas. Cheers, -- Jason On Thu, Jun 20, 2013 at 9:06 AM, Robert Hanson wrote: > (yes, I meant "forward compatibility" there) > > Jason, in our 100+ PyMOL session files that we can now read into Jmol we > have a few files that don't seem to have backward

[PyMOL] problem with "distance"

2013-06-20 Thread vincent Chaptal
Hi, I've just purchased v1.6 and installed it under MacOS 10.6.8. I have a problem with using "distance" from a script, as well as via the wizard. my pdb has 12 chains. when I type: distance d1, molA and chain a and resi 53 and name o, molA and chain d and resi 8 and name n the distance is dra

Re: [PyMOL] problem with "distance"

2013-06-20 Thread Thomas Holder
Hi Vincent, we introduced dynamic_measures in PyMOL 1.4, which uses the atom ID and is not robust against duplicated IDs. So the workaround here is to switch dynamic_measures off: PyMOL> unset dynamic_measures Hope that helps. Cheers, Thomas vincent Chaptal wrote, On 06/20/13 17:09: > Hi, >

Re: [PyMOL] Problems with Pymol v 1.6.0.0

2013-06-20 Thread Thomas Holder
Hi Matthew, thanks for the report. We fixed and pushed this to SVN today. Cheers, Thomas Matthew Baumgartner wrote, On 06/20/13 15:54: > Hi, > Adding to thread. > > I'm using pymol 1.6 (built from svn yesterday) on Ubuntu 13.04. > I've noticed that the selection indicators are not working pro

Re: [PyMOL] Problems with Pymol v 1.6.0.0

2013-06-20 Thread Thomas Holder
Hi Stephen, Stephen P. Molnar wrote, On 06/18/13 15:16: > Two minor, but annoying, problems with the new version in Debian 7.0 64 bit/ > > #1 The pull down menus in the graphics windows refuse to remain open > when clicked, unless I left click and hold. Is this normal behavior? this is not nor