[PyMOL] molecular surface area

2012-11-12 Thread amna khan
hi can anyone tell me, how can i caluclate the molecuar surface area for just interacting protein -ligand structure, not for whole protein.? when i do this first i hide the protein non-interacting part then by clicking A --> COMPUTE --> SURFACE--> MOLECULAR, no surface area is generated

Re: [PyMOL] electron density map

2012-11-12 Thread Folmer Fredslund
Dear Amna (?), 2012/11/12 amna khan > i have docked ligand with protein and final docked protein containing > ligand conformation have been generated into one file. Now for this > docked ligand-protein structure i want to calculate the electron dennsity > map by pymol. > > If I understand corr