How do I change the bond length between two atoms from the command
line, e.g. change the C-H bond from 1.09 to 1 Angstrom?
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Jens,
Unfortunately, those values are hardcoded. However, if you load a coordinate
file into PyMOL with alternate bond distances, and only modify dihedrals or use
the sculpting capability, then the input bond distances should be preserved
(for the most part).
Cheers,
Warren
-Original Mes
