[PyMOL] The List Archive is Back!

Folks, Thanks to mail-archive.com, the PyMOL-Users list is now once again searchable: http://www.mail-archive.com/pymol-users@lists.sourceforge.net The new search syntax is summarized at: http://www.mail-archive.com/faq.html#search For example, you can now quickly identify all 22 posts which h

[PyMOL] rotating map

I am visualizing in PyMol electrostatic potential generated by PBEQ Solver from CHARMM-GUI at http://www.charmm-gui.org/?doc=input/pbeqsolver The maps loads and colors nicely with the following commands suggested by the PBEQ Solver server: load 1zziA_pbeq.pdb load 1zziA_pbeq.dx, 1zziA_map show s

Re: [PyMOL] rotating map

Janek, You need to align your structure with the reference, then re-calculate the electrostatic potentials. Sincerely, Carlos >>> Jan Kosinski 04/28/09 9:04 AM >>> I am visualizing in PyMol electrostatic potential generated by PBEQ Solver from CHARMM-GUI at http://www.charmm-gui.org/?doc=inp

Re: [PyMOL] rotating map

I cannot do that, because the CHARMM-GUI server that I use for calculating the electrostatic potential changes the orientation of the input structures (I reported that to the authors). Cheers, Janek Carlos Huerta wrote: > Janek, > > You need to align your structure with the reference, then re-c

Re: [PyMOL] rotating map

Jan, Perform the structure alignment after loading the structure and map: load 1zziA_pbeq.pdb load 1zziA_pbeq.dx, 1zziA_map # add load target.pdb align 1zziA_pbeqCA, targetCA matrix_copy 1zziA_pbeq, 1zziA_map # Then continue with the rest of your script. Cheers, Warren > -Orig