Re: [PyMOL] pdb-l: chain alignment tool

2008-07-07 Thread gilleain torrance
Hi, There are many. One way is to use PyMol (or, indeed many other viewers). So I did it like this: fetch 1a25 show cartoon create chaina, chain a create chainb, chain b delete 1a25 align chaina, chainb color red, chain a color blue, chain b I guess that this could be generalised into a script t

Re: [PyMOL] movie between frames

2008-07-07 Thread DeLano Scientific
Yes: unset movie_loop -- DeLano Scientific LLC Subscriber Support Services mailto:supp...@delsci.com -Original Message- From: pymol-users-boun...@lists.sourceforge.net [mailto:pymol-users-boun...@lists.sourceforge.net] On Behalf Of Martin Weisel Sent: Saturday, July 05, 2008 4:07 AM To:

Re: [PyMOL] pdb-l: chain alignment tool

2008-07-07 Thread DeLano Scientific
Inside a script, I would suggest adding ",async=0" so that the fetch command is forced to complete before the next command is read: fetch 1a25, async=0 show cartoon create chaina, chain a ... ... -- Subject: Re: [PyMOL] pdb-l: chain alignment tool Hi, There are many. One way is to use PyMol (o