Inside a script, I would suggest adding ",async=0" so that the fetch command is forced to complete before the next command is read:
fetch 1a25, async=0 show cartoon create chaina, chain a ... ... -- Subject: Re: [PyMOL] pdb-l: chain alignment tool Hi, There are many. One way is to use PyMol (or, indeed many other viewers). So I did it like this: fetch 1a25 show cartoon create chaina, chain a create chainb, chain b delete 1a25 align chaina, chainb color red, chain a color blue, chain b I guess that this could be generalised into a script to align the chains of any dimer. gilleain On Mon, Jul 7, 2008 at 3:51 PM, David Hoksza <hok...@ksi.ms.mff.cuni.cz> wrote: > Hi, don't anybody of you know if there exists a tool, that can > visually align two protein chains? I.e. 1a25a and 1a25b seem very > similar to me and I would like to visually confirm or disprove this > fact. > > Thank you, > David >
