First, load a PDB file with values encoded in the B-factor column. Then
issue a command like the following:
spectrum b
specturm b, minimum=10, maximum=50
spectrum b, minimum=10, maximum=50, palette=blue_red
Predefined palettes include:
blue_greengreen_white_magenta red_cya
Fengyuan,
Unfortunately, the PyMOL's internal gui pop-up menu system was not designed
as nor intended to be a programmers interface and is subject to change at
any time. Any code which relies upon its behavior may therefore break with
future versions of the software.
Cheers,
Warren
--
DeLa
Fengyuan,
Although we cannot answer specific questions about an unsupported interface,
your question about "self_cmd" is relevant to the overall project since we
are intending to support multiple PyMOL instances within a single Python
interpreter via:
from pymol2 import PyMOL
instance1 = PyM
Ankit,
This has been detailed on the PyMOLWiki. All you need is (1) a structure and
(2) a text file with one number for each residue. To make it more accurate,
you can do one number per atom, but then the script(s) will need to be
changed a little.
So, check out
http://www.pymolwik
Hello everybody,
I'm trying to make a movie for chaning the point of view on a
structure. I let PyMol read in matrix then define it as a scene. After
the movie was set up, I can watch the movie playing well on the PyMol
window. However, if I try to save the PNG sequence, I get few
discontinuous pi
