[PyMOL] Pymol Crash in X11 on MacOSX 10.5

2008-02-11 Thread Buz Barstow
Hi All, I've been having a lot of trouble with Pymol since upgrading to the X11 included with MacOS 10.5. Of late (using X11 2.1.3), Pymol built with fink, and ipymol 1.0 have been crashing after a small amount of viewing and rotating an object in the program (a few rotations and zooms).

Re: [PyMOL] Pymol Crash in X11 on MacOSX 10.5

2008-02-11 Thread DeLano Scientific
Buz, > Is there a way that I can make MacPymol aware of these modules? Yes, simply rename MacPyMOL to PyMOLX11Hybrid (or from the command-line: mv MacPyMOL.app PyMOLX11Hybrid.app) and relaunch. Note that MacPyMOL uses the system-provided Python interpreter, so you'll need to install external

[PyMOL] Distance labels

2008-02-11 Thread Toni Pizà
Hi! When I create a distance in a pymol session, an object called "dist n" is created, and a label with there name is shown at the right of the screen, with the other objects loadeds. Can I create a dist, and render the dotted line at the screen, without having the label in the right menú? Thanks

Re: [PyMOL] strange pymol crash

2008-02-11 Thread JJ
Hello. I have just installed version 1.0r2 from svn on a brand new AMD Fedora 8 64-bit machine and it installed without error. However, when I try to run pymol I get the same startup error that I had received some time ago on a different machine (the earlier problem seemed to fix itself for some

Re: [PyMOL] Distance labels

2008-02-11 Thread Michael Lerner
An object whose name begins with an underscore will not appear in the menu. On Feb 11, 2008 3:13 PM, Toni Pizà wrote: > Hi! > > When I create a distance in a pymol session, an object called "dist n" > is created, and a label with there name is shown at the right of the > screen, with the other ob

Re: [PyMOL] strange pymol crash

2008-02-11 Thread DeLano Scientific
John, Thanks for following up. Officially speaking, PyMOL 1.0 is incompatible with Python 2.5, and we do not yet support 64 bits executables on any platform, though that should change with PyMOL 1.1: (certain on Linux, likely on Windows [if Python 2.5.2 is released], and it remains a target on

Re: [PyMOL] strange pymol crash

2008-02-11 Thread JJ
Thanks Warren, the trunk version worked perfectly. John --- DeLano Scientific wrote: > > Anyway, building the open-source code from trunk is > an immediate solution > for running PyMOL Python 2.5 in 64-bit mode under > Linux. _