Hi.
I'm interested prototyping some interactive molecular modeling and
simulation code using pymol. I know one can change the atomic coordinates
wholesale in simple ways via alter_state (like x=x+1). Is there an efficient
way to change all coordinates to arbitrary values (like coordinates output
Hi David,
The state sort of refers to the frame or model in case of a
multiframe/multimodel (multistate) system. You don't need to use it
with set, it's optional. Just note that "dash_length" and dash_length
are quite different things.
Best,
Tsjerk
On 3/28/07, David Shin wrote:
This regards
Will,
The easiest approach, short of Python programming, is to temporarily load a
new pdb file with updated coordinates and simply update the existing object
before deleting the original.
load original.pdb
unset auto_zoom
# then repeat the following as often as necessary
set suspend_updates
loa
Thanks for the idea Warren! I'd actually be more than happy to get my
hands dirty in the actual code but I wasn't able to figure out how to
change coords. I tried changing the coords in the chempy atoms e.g.
for a in cmd.get_model("myprot").atoms[:1]:
print a.coords
a.coords[0
Thanks for the idea Warren! I'd actually be more than happy to get my
hands dirty in the actual code but I wasn't able to figure out how to
change coords. I tried changing the coords in the chempy atoms e.g.
for a in cmd.get_model("myprot").atoms[:1]:
print a.coords
a.coords[0
