Re: [PyMOL] pymol slow on linux PC (Beld, Joris)

2007-01-23 Thread Esben Jannik Bjerrum
Hi How did you install the Nvidia-drivers? I Once had a similar problem because I had used both the linux distribution package and installed manually with nvidias driver. The old libraries were not properly removed by nvidias installer, giving rise to the partial working OpenGL. Cheers, Es

Re: [PyMOL] pymol slow on linux PC (Beld, Joris)

2007-01-23 Thread Esben Jannik Bjerrum
I just looked at some old notes: If you try LIBGL_DEBUG=verbose pymol in a terminal, you might get additional information whats wrong. Esben Do you Yahoo!? Everyone is raving about the all-new Yahoo! Mail be

Re: [PyMOL] Xmlrpc listener

2007-01-23 Thread Greg Landrum
Could someone please point me toward some information on the xmlrpc listener and how to communicate with pymol using this? I am still actively maintaining/using the xmlrpc module (and really should send Warren the most recent version so it can be included). I'm happy to answer questions about it

[PyMOL] Command:turn

2007-01-23 Thread Cartailler, Jean-Philippe
Greetings, Does anyone know if the camera commands (turn & move) can be constrained to the reference (global) axes? I would imagine that the turn command (http://pymol.sourceforge.net/newman/ref/S1000comref.html#2_166) would cause a camera of 45 degrees about the reference axis: PyMOL> turn x, 4

Re: [PyMOL] Command:turn

2007-01-23 Thread DeLano Scientific
JP, > According to the manual, it is also supposed to be > constrained to the origin as well but doesn't appear to do > so, at least not in my hands Are its constraints possibly > overridden by such commands as center, orient, origin? origin position=[0,0,0] turn axis,angle can change the ori

[PyMOL] Mutagenesis Wizard

2007-01-23 Thread Mitchell J Stanton-Cook
Hello all ! I would like to employ pymol to perform some mutagenesis. At present there is the mutagenesis wizard. Is it possible to execute this from the command line ? i.e. sel resi X set mutant to CYS mutate(x) save strucutre Cheers Mitch