Re: [PyMOL] Installing pymol (again)

2006-12-11 Thread Peter Adrian Meyer
Terry, > Method 1. > - > > In the most straightforward effort, I download pymol-0_99rc6-src.tgz and > run > >python setup.py install >python setup2.py install >./pymol > > as instructed. The first two commands run fine. The ./pymol gets me > > Fatal Python error: Interpreter

Re: [PyMOL] Installing pymol (again)

2006-12-11 Thread Terry Jones
Brian Goodfellow suggested I use macpymol. I did and it Just Works. I don't know how I managed to overlook that link the first time round... Terry

Re: [PyMOL] H-bonds and VDW

2006-12-11 Thread Robert Immormino
Kun, When I'm interested in dimer interfaces, or protein ligand contacts I usually use Molprobity to define the interface. http://molprobity.biochem.duke.edu/ It is a bit of a process, but here's the rundown: Load your .pdb into molprobity Add hydrogens Visualize interface contacts Then select

[PyMOL] installation trouble

2006-12-11 Thread Angelo D Favia
Hi all, I'm trying to install the latest version of pymol on my laptop (Windows XP pro SP2) but there seem to be something wrong. I get the following error message in a window whose title is "Can't run 16-bit Windows program": "Cannot find file C:\***\pymol-0_99rc6-bin-win32\SETUP.EXE (or one

Re: [PyMOL] installation trouble

2006-12-11 Thread DeLano Scientific
-Original Message- From: pymol-users-boun...@lists.sourceforge.net [mailto:pymol-users-boun...@lists.sourceforge.net] On Behalf Of Angelo D Favia Sent: Monday, December 11, 2006 9:39 AM To: pymol-users@lists.sourceforge.net Subject: [P

Re: [PyMOL] installation trouble

2006-12-11 Thread Angelo D Favia
I already tried all of the solution at the website but they didn't work for me. The error message still appears. A. DeLano Scientific wrote: -Original Message- From: pymol-users-boun...@lists.sourceforge.net [mailto:pymol-users-b

[PyMOL] Installation trouble

2006-12-11 Thread Angelo D Favia
Hi all, I'm trying to install the latest version of pymol on my laptop (Windows XP pro SP2) but there seem to be something wrong. I get the following error message in a window whose title is "Can't run 16-bit Windows program": "Cannot find file C:\***\pymol-0_99rc6-bin-win32\SETUP.EXE (or on