Terry, > Method 1. > --------- > > In the most straightforward effort, I download pymol-0_99rc6-src.tgz and > run > > python setup.py install > python setup2.py install > ./pymol > > as instructed. The first two commands run fine. The ./pymol gets me > > Fatal Python error: Interpreter not initialized (version mismatch?)
You've probably tried this already, but what happens if you give a full-path to a single python interpreter (aka /usr/local/bin/python24 instead of python below). Assuming that the pymol launch script is using the same python intpreter, and PYTHON_HOME/PYTHONPATH is set correctly, this might clear up the version mismatch (or at least lead to different errors). > Method 2. > --------- Can't help you here...maybe one of the OS X experts will chime in. > Method 3: > --------- Which freeglut target are you using (freeglut or freeglut-static)? You've probably tried the other build target, but if not it may be worth a shot. The command below looks like it's trying to build a static library while linking to a dynamic/shared one...there's probably a way to do this, but it seems like avoiding it might reduce possible sources of problems. Also, what happens when you set up LDFLAGS so that it tries using -bind_at_load? > > I tried to build completely from source (something I've done before). When > building the ext packages, build.com fails building freeglut: > > gcc -g -O2 -o CallbackMaker CallbackMaker-CallbackMaker.o > ../../../src/.libs/libglut.a -lm -L/usr/X11R6/lib -lGL -lGLU -lXext > -lX11 -lXxf86vm > /usr/bin/ld: warning multiple definitions of symbol _glPointParameteri > > /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib(gll_api.o) > definition of _glPointParameteri > /usr/X11R6/lib/libGL.dylib(dri_dispatch.o) definition of > _glPointParameteri > /usr/bin/ld: warning multiple definitions of symbol > _glPointParameteriv > > /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib(gll_api.o) > definition of _glPointParameteriv > /usr/X11R6/lib/libGL.dylib(dri_dispatch.o) definition of > _glPointParameteriv > /usr/bin/ld: warning suggest use of -bind_at_load, as lazy binding may > result in errors or different symbols being used > /usr/bin/ld: Undefined symbols: > _glutBitmapHelvetica12 > _glutBitmap8By13 > _glutBitmap9By15 > _glutBitmapHelvetica10 > _glutBitmapHelvetica18 > _glutBitmapTimesRoman10 > _glutBitmapTimesRoman24 > _glutStrokeMonoRoman > _glutStrokeRoman > symbol _glPointParameteri used from dynamic library > /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib(gll_api.o) > not from earlier dynamic library > /usr/X11R6/lib/libGL.1.dylib(dri_dispatch.o) > symbol _glPointParameteriv used from dynamic library > /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib(gll_api.o) > not from earlier dynamic library > /usr/X11R6/lib/libGL.1.dylib(dri_dispatch.o) Good luck, Pete Pete Meyer Fu Lab BMCB grad student Cornell University
