Hi Philippe,
Pymol isn't very good at handling many spheres. However, Povray is
extremely efficient with raytracing scenes consisting of spheres and
if you know the perspective you want to have the image from, you can
convert your atom set to spheres (with desired radii) and apply the
view from P
Hi Elo,
Unless I've misunderstood you, all you have to do is find the maximum
value (perhaps 2.33, based on your email) and divide all the numbers (in
all PDB files) by this number. You can write a simple Perl/Python
program to do this or, if you're careful to get everything imported and
exp
Hi PyMol-ers,
APBS plugin question:
Would someone plase let me know what kind of map am I missing here:
*ObjectMapLoadDXFile-Error: Unable to open file!
*What I've done:
Followed Michael Lerner's procedure.
1. Load your molecule into PyMOL
2. Load the plugin
3. Click on "Set grid"
4. Cli
> Pymol isn't very good at handling many spheres.
Slanderous! ...but true with default settings. However:
./pymol -O 1 monster_large_file.pdb
Will enable PyMOL to display, manipulate, and render at least a million
spheres per GB of RAM.
Also try -O values up through 5 for alternate approach
Folks,
In case there is anyone out there still stuggling to get PyMOL installed on
their new DELL system, below is the latest word on how to work around the
problem (graciously passed along by one of our users):
Cheers,
Warren
"I found the solution, apparently the installer gets screwed up by s
