Dear Luca,
I own a current G4 iBook, and the Mac mini is in principle an iBook in
cubuoid form (but without display and keyboard). I don't know how
demanding your pymol sessions are, but I'm quite happy with the MacPyMOL
version on my iBook, which seems to be subjectively a little bit faster
Hi Luca,
I'm using MacPymol on an old blue and white G3, and it works fine.
Einat
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Luca,
We bought a Mini here in the office to use as an inexpensive, secure,
stable, & hassle-free CVS server. I hadn't tried running PyMOL on it until
today...
In a very small set of tests with surfaces, a $600 1.42 Ghz G4 Mini (ATI)
has about 25% of the OpenGL performace and 60% of the ray-trac
Dyda,
By default, PyMOL uses charges and radii from the Amber99 forcefield, as per
APBS. The PDB2PQR tool included with APBS enables you to use other
charge/radius sets, such as CHARMM.
Chain IDs need to be removed for PQR...though future versions of PyMOL do
this automatically.
Cheers,
Warren\
Laura,
Presents are simply miniature Python programs bound to menu items. To
create your own while avoiding changes to "menu.py" which is overwritten
during upgrades, you can wrap and replace the 'presets' function in the
"menu" module at runtime.
# file: add_preset.py
# "run add_preset.py" to
Hello Warren and pymol users,
Thanks for your help on what to fix to get r3d working in 0.98 with linux .
.. but I still have one problem
How do I get a cgo.pyc to replace the cgo.pyc which has the bug in it. Sorry
I dont understand anything about the inner workings of pyhton to replace the
faul
On Jun 15, 2005, at 9:13, Luca Fenu wrote:
I thought so, but couldn't be sure, as a lot depends on the quality of
the drivers... w/o Direct Rendering (ATI drivers sucks!), my ath64
laptop with R9700 only manages to give me some 4 fps... that makes it
all but unusable. so i was afraid to find m
There are two typos in the documentation page:
http://pymol.sourceforge.net/newman/user/S0300movies.html#11_4
"...
file_list = glob("mov*.pdb"):
for file in file_list
..."
should be:
"...
file_list = glob("mov*.pdb")
for file in file_list:
..."
-Sahak
