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-Original Message-
From: owner-ccp...@dl.ac.uk [mailto:owner-ccp...@dl.ac.uk] On Behalf Of Perl
Mol
Sent: Wednesday, March 31, 2004 10:16 PM
To: ccp...@dl.ac.uk
Subject: [ccp4bb]: Announcing PerlMol
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Hello,
I am making a movie of PDBs files whose atoms get very close
together and pymol begins to draw all sorts of bond
connectivity, which is of course correct behavior for distance based bonds.
However, these extra bonds seems to stick around even
once the atoms return to normal positions, tha
Thomas,
The trick for handling these sorts of situations is to load the
first PDB file into PyMOL using "reasonable" atom distances. So long as no
new atoms are added in subsequent PDB files, PyMOL will continue to use the
connectivity from the first state.
The only way to curre
