Re: [PyMOL] show residues forming hydrogen bonds with each other

2004-01-30 Thread Morris Eli Feldman
Hi Yunfeng, I ran across the following link in the archives that might get you started. http://sourceforge.net/mailarchive/message.php?msg_id=6905613 Best, Morri On Wed, 28 Jan 2004, Yunfeng Hu wrote: > Hi, I have the following task to do and wonder if anyone can show a simple > way to do it.

[PyMOL] cartoon transparency & a possible 'native' bug

2004-01-30 Thread Douglas Kojetin
[trying a third time] Hi All- In reference to this post: http://sourceforge.net/mailarchive/message.php?msg_id=6977122 When I gave PyMOL this command, I got the following error: Error: unknown setting 'cartoon_transparency'. Is this setting only available on newer versions of PyMOL? If so, a

[PyMOL] cartoon transparency & a possible 'native' bug

2004-01-30 Thread Douglas Kojetin
Hi All- In reference to this post: http://sourceforge.net/mailarchive/message.php?msg_id=6977122 When I gave PyMOL this command, I got the following error: Error: unknown setting 'cartoon_transparency'. Is this setting only available on newer versions of PyMOL? If so, anyone working on a *new

Re: [PyMOL] show residues forming hydrogen bonds with each other

2004-01-30 Thread Tsjerk Wassenaar
Hi Yunfeng Hu, You can try the following (which has surely been on the list before :) ): show sticks, (byres ((protA within 3.5 of protB) or (protB within 3.5 of protA))) You might want to make sure that you only have hydrogen bonds by adding additional terms. Hope it helps. Cheers, Tsjer

[PyMOL] cartoon transparency & a possible 'native' bug

2004-01-30 Thread Douglas Kojetin
[i'm sending again; it seems the pymol sourceforge list was down when i tried to send this] Hi All- In reference to this post: http://sourceforge.net/mailarchive/message.php?msg_id=6977122 When I gave PyMOL this command, I got the following error: Error: unknown setting 'cartoon_transparency'.