[PyMOL] ED maps: ccp4 2 xlpor

2004-01-05 Thread Mark Wilke
Can anyone tell me how to convert my weighted .phs map from ccp4 to an xlpor map so that I can make a pretty electron density picture? I figure there must be a utility to do this out there since pymol only uses the xplor map files. Thanks. - Mark

[PyMOL] searchable archive?

2004-01-05 Thread Mark Wilke
Is there a searchable archive of this newsgroup? - Mark

Re: [PyMOL] searchable archive?

2004-01-05 Thread Michael Banck
On Mon, Jan 05, 2004 at 11:11:15AM -0800, Mark Wilke wrote: > Is there a searchable archive of this newsgroup? There's a browsable archive at http://sourceforge.net/mailarchive/forum.php?forum_id=60 Dunno whether one can search it, too. Michael

Re: [PyMOL] searchable archive?

2004-01-05 Thread Michael George Lerner
Sourceforge has one here: http://sourceforge.net/mailarchive/forum.php?forum_id=60 (there's a search box in the top left corner) but it doesn't always seem to work for me. There's another archive here: http://chips.csb.ki.se/pymol/ where the searches seem to actually work. I have no idea who

Re: [PyMOL] searchable archive?

2004-01-05 Thread Mark Wilke
Thanks. I answered my electron density map question using the archive. Apparently pymol reads ccp4 maps. The manual just wasn't updated. - Mark On Mon, 5 Jan 2004, Michael George Lerner wrote: > > Sourceforge has one here: > > http://sourceforge.net/mailarchive/forum.php?forum_id=60 > >

[PyMOL] make cartoon from carbon atom trace?

2004-01-05 Thread Ann Mullin
Hello, I have some PDF files which only contain the backbone carbon atoms, and I would like to use PyMOL to show a cartoon representation of the backbone. Any suggestions? I have a G5 mac. Thanks, Ann Ann Mullin Cell and Molecular Biology Dept. Tulane University New Orleans, LA 70118-5

[PyMOL] CCP4 map can't be displayed in part of the unit cell !?!

2004-01-05 Thread Fred Berkovitch
Hi All, For some reason, I can't contour my CCP4 map (generated with Solve/Resolve) around a ligand in my structure. I know there's electron density around my ligand, because I can see it in O (convert the CCP4 map to an omap) or XtalView (convert the ccp4 map to fsfour). I used the old CCP