[PyMOL] rpm installation problems

Hi everyone I'm trying to install version 0.82 to replace 0.78. The relevant rpms are pymol-0.82-1.rh70.py152.i386.rpm and pymol-0.78-3.rh70.py152.i386.rpm. However, I get a load of messages of the following type [r...@dodo progs]# rpm -ivh pymol-0.82-1.rh70.py152.i386.rpm Preparing...

Re: [PyMOL] rpm installation problems

Hi Daniel, AFAIK, rpm complains if you want to install a newer package version over an older one. In the case of an update, just issue the command "rpm -Uhv pymol-0.82-1.rh70.py152.i386.rpm". Best regards, Dirk. -- *** Dirk Kostrew

Re: [PyMOL] rpm installation problems

Hi Dirk Perfect, thanks. Guess it's not just my pymol understanding that's incomplete... Now.. why is the text in the top, grey window suddenly enormous in the new version? - this is a little inconvenient for get_view, for example. Daniel +--

[PyMOL] Colouring according to B-factor

-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Title says it all... Is it possible to draw a protein (back-bone, cartoon, sticks...) with a colouring scheme according to the crystallographic B-factor of each atoms? Thanks for the help Serge. PS: If any one as some info on the previous quest

Re: [PyMOL] Colouring according to B-factor

Serge, * Serge Cohen [2002-10-02 16:10] wrote: > Title says it all... > > Is it possible to draw a protein (back-bone, cartoon, sticks...) with a > colouring scheme according to the crystallographic B-factor of each > atoms? I have a color_b.py python script on my PyMOL web page that you can

Re: [PyMOL] get_view

On Wednesday, October 2, 2002, at 10:10 AM, Serge Cohen wrote: PS: If any one as some info on the previous questions I asked (get_view blocks...), really don't fill shy about it. I did not have any answer (even off list) Actually, I would also be very interested in knowing what the matrix ou

Re: [PyMOL] get_view

* Luca Jovine [2002-10-02 10:53] wrote: > On Wednesday, October 2, 2002, at 10:10 AM, Serge Cohen wrote: > > > PS: If any one as some info on the previous questions I asked (get_view > > blocks...), really don't fill shy about it. I did not have any answer > > (even off list) > > Actually, I

Re: [PyMOL] get_view

Dear Luca and Serge, > > PS: If any one as some info on the previous questions I asked (get_view > > blocks...), really don't fill shy about it. I did not have any answer > > (even off list) > here is the meaning of the rotation matrix: set_view (\ #rotation matrix, describes the orientation

Re: [PyMOL] Meaning of the get_view block

Quoting Serge Cohen : > -BEGIN PGP SIGNED MESSAGE- > Hash: SHA1 > > Hi again, > > I posted a question few days ago about the way to center on a particular > zone of a structure without using the zoom command (which would touch a > lot of view parameters at once). Dear Serge, I think tha

[PyMOL] spheres in very large ppdb files

I'm relatively new to PyMOL, and I've been repeatedly running into a problem with the pdb files I use, namely that whenever I try to use the show spheres command the program crashes. The same scripts work for smaller proteins, so I'm guessing I need to find some way to increase the memory alloca

RE: [PyMOL] spheres in very large ppdb files

Ron, This appears to be a Windows specific problem. I can view spheres with 1bgy.pdb just fine under Linux (albeit 168 MB of RAM...), but it blows out on Windows. However, if you lower the sphere_quality (which only affects OpenGL quality), it holds together: load 1bgy.pdb set sphere

Re: [PyMOL] spheres in very large ppdb files

Quoting Ronald L Koder : > I'm relatively new to PyMOL, and I've been repeatedly running into > a problem with the pdb files I use, namely that whenever I try to use the > show spheres command the program crashes. The same scripts work for > smaller proteins, so I'm guessing I need to find some w

[PyMOL] FYI: nvidia stereo + twinview does not work

Hi People, For your information, the latest Nvidia driver does not support stereo with a dual monitor (aka TwinView) configuration. It might work if you have 2 graphics cards though I haven't tried that. Does any one know if this is possible with any of the ati firegl cards? Thanks, Zac