Bishwa,
Yes, PyMOL makes this very easy. To select any protein atoms within 5
Angstroms of a selection just type:
select polymer within 5 of my_sele
To expand the above selection to complete residues just type:
select br. polymer within 5 of my_sele
Cheers,
-- Jason
On Mon, Aug 6, 2012 at 6:
Hi Brennen,
If the mutagenesis wizard is open, then you can manually call the
do_select command (which is what you'd being doing if you picked with
the mouse). Here's an example,
fetch 1cll, async=0
wizard mutagenesis
cmd.get_wizard().do_select("resi 40")
Cheers,
-- Jason
On Mon, Jul 11, 20
Thanks Jerome!
It worked! I also checked out your website and your tutorial in French.
They're both great!
-Charlotte
From: Jerome PANSANEL
To: pymol-users@lists.sourceforge.net
Subject: Re: [PyMOL] Selecting residues on surface only
Date: Wed, 11 Jan 2006 17:26:55 +0100
Hi
Hi,
Le Mercredi 11 Janvier 2006 17:27, Charlotte Habegger-Polomat a écrit :
> Hello Pymol users!
>
> As a fairly unexperienced user of Pymol, I have not yet found a way to
> select all residues in one of the cavities in my protein of interest.
> When I render the protein as a surface, I can't sele
Try:
create 4a, byres (mol around 4 . )
Tsjerk
On Wed, 8 Jun 2005 20:50:11 -0700
Eric Hu wrote:
Hi, I ran into a problem selecting nearby residues of
one molecule regarding the binding partner. The "byres"
command seems to work only with one single residue. It
does not select the whole
Jason
Ah, I found the problem:
Sticks represent bonds, not atoms. Normally, in order to see a bond, *BOTH*
atoms involved have to have either sticks or lines shown. That's why you
weren't seeing anything until increasing the radius of the selection sphere,
which included the first bond atom and
