Bishwa, Yes, PyMOL makes this very easy. To select any protein atoms within 5 Angstroms of a selection just type:
select polymer within 5 of my_sele To expand the above selection to complete residues just type: select br. polymer within 5 of my_sele Cheers, -- Jason On Mon, Aug 6, 2012 at 6:14 AM, Bishwa Subedi <bps...@utu.fi> wrote: > Hi, > > Is it possible to select the residues within a range of specific distance > using PyMOL? I am a biological student so any inbuilt commands would be > convenient. However, any suggestion to do so would ease my work. > > Best regards, > > Bishwa > ------------------------------------------------------------------------------ > Live Security Virtual Conference > Exclusive live event will cover all the ways today's security and > threat landscape has changed and how IT managers can respond. Discussions > will include endpoint security, mobile security and the latest in malware > threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- Jason Vertrees, PhD PyMOL Product Manager Schrödinger, LLC (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 ------------------------------------------------------------------------------ Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
